DreEX0022101 @ danRer10
Exon Skipping
Gene
ENSDARG00000070584 | clic5b
Description
chloride intracellular channel 5b [Source:ZFIN;Acc:ZDB-GENE-040426-2542]
Coordinates
chr20:44062845-44067071:+
Coord C1 exon
chr20:44062845-44062970
Coord A exon
chr20:44063947-44064053
Coord C2 exon
chr20:44066890-44067071
Length
107 bp
Sequences
Splice sites
3' ss Seq
TACCTTTCCTTGTGTCCAAGGTA
3' ss Score
6.49
5' ss Seq
AAGGTATGC
5' ss Score
9.55
Exon sequences
Seq C1 exon
GAAACCAGCTGATTTGCACAATTTGGCTCCAGGCACTCATCCTCCTTTCCTGACCTTCAACGGTGAGGTGAAGACAGACGTTAACAAGATTGAGGAGTTCCTGGAGGAGGTTTTGGCACCACCAAA
Seq A exon
GTACCCCAAACTTGCAGCCAGGCACAGGGAGTCAAACGCAGCAGGGAATGACATATTTGCAAAGTTCTCGGCTTTCATAAAAAACACGAAGCCAGATGCGAATGAAG
Seq C2 exon
CTCTGGAGAAGGGTTTGACAAAGGCACTCAAGAAGCTGGATGAGTACCTGAACAGTCCTTTGCCTGATGAGGTTGATGCCGACAGCATGGAGGAGGAAAAGGCCTCCAACCGCAGGTTCCTGGACGGGAACGATCTGACTCTGGCAGACTGTAACCTGCTGCCAAAACTCCACATTGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000070584-'5-6,'5-5,6-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.180 A=0.108 C2=0.262
Domain overlap (PFAM):
C1:
PF134171=GST_N_3=FE(57.5=100),PF134101=GST_C_2=PU(8.3=25.6)
A:
PF134171=GST_N_3=PD(0.1=0.0),PF134101=GST_C_2=FE(27.3=100)
C2:
PF134101=GST_C_2=FE(45.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCAGGCACTCATCCTCCTT
R:
AGAGTCAGATCGTTCCCGTCC
Band lengths:
242-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]