GgaEX6004302 @ galGal4
Exon Skipping
Gene
ENSGALG00000016020 | CLIC6
Description
chloride intracellular channel 6 [Source:HGNC Symbol;Acc:HGNC:2065]
Coordinates
chr1:105366187-105368054:+
Coord C1 exon
chr1:105366187-105366312
Coord A exon
chr1:105367386-105367492
Coord C2 exon
chr1:105367873-105368054
Length
107 bp
Sequences
Splice sites
3' ss Seq
TGATTCTTTCAACTCCTCAGGTA
3' ss Score
8.12
5' ss Seq
AAAGTAGGT
5' ss Score
6.84
Exon sequences
Seq C1 exon
AAAACCTGCTGACCTGCAGAACCTGGCCCCGGGGACGAACCCACCCTTCATGACGTTTGATGGCGAAGTCAAAACTGACGTCAATAAGATTGAGGAGTTCTTGGAAGAAAAGCTAGCGCCGCCCCG
Seq A exon
GTATCCCAAACTCGCACCGAAGCACCCCGAGTCCAACTCTGCAGGAAACGATGTGTTTGCAAAATTCTCTGCATTCATCAAGAACCCAAGAAAAGATGCTAATGAAA
Seq C2 exon
ATCTGGAAAAATCTTTGCTTAAAGCCCTGAGGAAGCTGGACAACTATTTAAATAGCCCCTTGCCTGATGAAATTGATGCTTACAGCACTGAGGAGATCACTGTGTCCTGCCGCAAATTCCTGGATGGAGATGAGCTCACCTTAGCGGATTGCAACCTCCTACCAAAGCTCCACATAATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016020-'2-3,'2-2,4-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.163 A=0.216 C2=0.000
Domain overlap (PFAM):
C1:
PF134171=GST_N_3=FE(57.5=100)
A:
PF134171=GST_N_3=PD(0.1=0.0),PF134101=GST_C_2=PU(20.9=62.2)
C2:
PF134101=GST_C_2=FE(54.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGAACCCACCCTTCATGAC
R:
AGGTTGCAATCCGCTAAGGTG
Band lengths:
250-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]