RnoEX0021787 @ rn6
Exon Skipping
Gene
ENSRNOG00000001247 | Clip1
Description
CAP-GLY domain containing linker protein 1 [Source:RGD Symbol;Acc:67404]
Coordinates
chr12:38408388-38411763:+
Coord C1 exon
chr12:38408388-38408544
Coord A exon
chr12:38410191-38410278
Coord C2 exon
chr12:38411598-38411763
Length
88 bp
Sequences
Splice sites
3' ss Seq
ACTTGCTTTTTTTTTTATAGGTT
3' ss Score
11.86
5' ss Seq
ACGGTAATT
5' ss Score
7.31
Exon sequences
Seq C1 exon
ACATGGAGGCAAAATTTAAAGAGAAGGATGAACGGGAAGATCAGCTGGTAAAGGCAAAGGAAAAGTTAGAAAATGACATTGCAGAAATAATGAAGATGTCAGGGGACAACTCTTCTCAGCTGACAAAGATGAATGACGAATTACGTCTGAAGGAAAG
Seq A exon
GTTCTGGGGATTGAGCTCAGGTCCTCATGCCTGCAAAGCAAACCCTTTACTGACTGAGCCATCTCACCAGCAGCCAGAATTACTTACG
Seq C2 exon
GTCTGTGGAAGAACTACAACTCAAACTTACAAAGGCTAATGAAAATGCAAGTCTTCTGCAGAAAAGTATCGGGGAAGTAACTCTTAAAGCTGAACAGAGTCAACAGGAAGCAGCCAAAAAACATGAAGAGGAAAAGAAAGAACTGGAGAACAAATTGTTGGAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001247-'36-26,'36-25,37-26
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.868 A=0.700 C2=0.689
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(17.4=100)
A:
PF0157614=Myosin_tail_1=PD(0.1=0.0)
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000001685fB3205
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGGACAACTCTTCTCAGCT
R:
TTGGCTGCTTCCTGTTGACTC
Band lengths:
174-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]