RnoEX0021794 @ rn6
Exon Skipping
Gene
ENSRNOG00000001247 | Clip1
Description
CAP-GLY domain containing linker protein 1 [Source:RGD Symbol;Acc:67404]
Coordinates
chr12:38368693-38375500:+
Coord C1 exon
chr12:38368693-38368714
Coord A exon
chr12:38369489-38369646
Coord C2 exon
chr12:38375308-38375500
Length
158 bp
Sequences
Splice sites
3' ss Seq
TATATTTTATTTAAGTACAGTAG
3' ss Score
-1.91
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
CTGATTCCATAGACACCATGAG
Seq A exon
TAGGGGCCGAATGTGGCAGTGCATGCCTTAAATTCCATCGCCCGGGAGGCAGAGTCAGGTGGATCTCTGATCTATGTAGCAAGAACCATAACAGCCAGAACTACACAACTGAAAGACACTGTCTCAACAAACAAACAAAAGCAAAGGTGGAGGAGGAA
Seq C2 exon
ACTTAACCAAGAGACTAAGTTCTCTATAGAAACACCCACATTTGTATGGATGATTGGGGAAAGATAGTGGCAGCAGACAAGGGAAAAGCATCCTGACCTTCCGAGAAAATGAGTATGCTGAAACCCAGCGGGCTGAAGGCCCCGACCAAGATCCTAAAGCCTGGGAGCACAGCCTTGAAGACCCCTGCTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001247-'9-2,'9-1,10-2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.483
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]