RnoEX0021859 @ rn6
Exon Skipping
Gene
ENSRNOG00000003714 | Clk4
Description
CDC-like kinase 4 [Source:RGD Symbol;Acc:1310274]
Coordinates
chr10:36720700-36725605:+
Coord C1 exon
chr10:36720700-36720860
Coord A exon
chr10:36722343-36722420
Coord C2 exon
chr10:36725383-36725605
Length
78 bp
Sequences
Splice sites
3' ss Seq
TATTTCTGTCTGTTCCTAAGGGA
3' ss Score
7.16
5' ss Seq
AGGGTATGA
5' ss Score
6.84
Exon sequences
Seq C1 exon
ATGCGGCATTCCAAACGAACTCACTGTCCTGATTGGGATAGCAGAGAAAGCTGGGGCCATGAAAGCTACAGTGGAAGTCACAAACGGAAGAGGAGATCTCATAGCAGTACGCAGGAGAATAGGCATTGTAAACCACATCATCAGTTTAAAGACACTGATTG
Seq A exon
GGATCTTTGTGTACAAATCTTTGCCTGTGGTTATTTCCTGAGAGTAGATTCTAAGAAGAGGCATTTTCAAGTTAAAGG
Seq C2 exon
TCACTATTTAGAAGCAAGATGCTTGAATGAGAGAGATTATCGGGATCGGAGATACATTGATGAATACAGAAATGACTACTGTGAAGGATATGTTCCAAGACATTACCATAGAGACATTGAAAGCACTTACCGGATCCATTGCAGTAAATCCTCAGTCAGAAGCAGGAGAAGCAGCCCTAAAAGAAAACGTAACAGACACTGTGCGAGTCATCAGTCACATTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003714_MULTIEX1-2/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGGCCATGAAAGCTACAG
R:
TCAATGTATCTCCGATCCCGA
Band lengths:
171-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]