RnoINT0037404 @ rn6
Intron Retention
Gene
ENSRNOG00000003714 | Clk4
Description
CDC-like kinase 4 [Source:RGD Symbol;Acc:1310274]
Coordinates
chr10:36720700-36725605:+
Coord C1 exon
chr10:36720700-36720860
Coord A exon
chr10:36720861-36725382
Coord C2 exon
chr10:36725383-36725605
Length
4522 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAAT
5' ss Score
4.94
3' ss Seq
ATCCTTTAATGTGTTTGCAGTCA
3' ss Score
6
Exon sequences
Seq C1 exon
ATGCGGCATTCCAAACGAACTCACTGTCCTGATTGGGATAGCAGAGAAAGCTGGGGCCATGAAAGCTACAGTGGAAGTCACAAACGGAAGAGGAGATCTCATAGCAGTACGCAGGAGAATAGGCATTGTAAACCACATCATCAGTTTAAAGACACTGATTG
Seq A exon
GTAAATGACTTGTATTTTAAGTTTTAACAATTTGGCATTTGCTTATATAGCTTTTATCAAATTTGGAATTCAGACAAAAAAAAAAACCGATTCAGGGGGAAAAAACCACAGAGTGTCATAGGCTTAGTATATATAGTATCATACTGCCTAGACTAAAGCTGTGAATAAAATAGTTTGTCCTGTGTCTGTCTGGGATCAATAGGAGACAGTAACTCAGCAGGTGACTAAAACTAAAGGCTCTGAGGATGTGGTTCATCTGAGGATGAGGAATACTTGCTACCTATTATGTGTGAGGTCCCAAAAGCCTTAGAAACCCCTCCATCAAAAAAGGAGGAGGAAGTCAAAAGATTATATTCAAGAACATATACAAAGTTGAATAATGATACCCAATGAGTAGTTTTAACTGTCTATAGGAAGGTGGCATATGTATTTGGGTGTGCAAGAAGTGTTTCACAATTGAGATATCATAGCATGTGGTTAATCCAGATGAGAAAAGCAGCAAATGCTATCTGAGATCATTCAAGTGCTTTGAGGAAGAGCCATTCATGTTACATCTGCAGGTTATATTTATAGAACACCAGTGGGTATGTCTGTCTGAGATTTTTAGAAACTTGCATTATATTTTGAGAATGTTTTTACAGACATTCTCTGGTAATGTAGGATAGAGCCTCAGTAAAAGTTTGTGATAGTATGTCTTATTTTATTATAATTATAAGATTTGAAGGTAATATTTTTATATAGAATGAAAAGTATCTTAAAGTTCTAAATAGTAAAGAAAGGCTAGGTGAGTCATTTCTTTCACTCTGCCTTCCATTAATTTCCCTTTCTCATTTGTTTTGTTGGTTCTATGTTTTCTCCTTGTTTGTACAGATGTTCCATTGGGGCTGTTTACCAGATTGCTTTCTAAATTAGCCAGCTGGGGTTACTTTAAAAACAGTATGTAATTTTTTTTCCTTCTCCATGCTAAACAGAGTTGTCTGCCAAAGAGCTTGTTTGTAGTTCTTGTAAACTAATCATATTTTATCAAACAGTTATGTAAGGGGTACTGGGTGAGGTTATGGAAGGTTCAATAACCAGACCTTATTAATGAACACCATACAAATTGTACCCCATTATTAATGAGTACAAGATACTCTTTAAGGCTTACTATCTTACAACAATTATACGTAGTGCTAGAGTATATTATATATGTGAAAAGGTTGATTTGAGTGATTTGTGTTCATTATAATTATAAAAACCAGTCAGTCCAATTAACCACTAAGCCAGCACTACCATTCTTGACATTAACATCAGACACATTGGTGGTTATTATTCACCACCATCCAAACTATTCACCAATTATAAACATCTTTCTGAAAACTAAAGTTTATGAGTATTTTAATAGTTACTGGGAAATTGAAGCAGCAGCAAAGTGTGAAAAGGAGCAGGGGTATGGAAACCATTGCCCATTGCTTGACTAAATTATTTCTGTCTGTTCCTAAGGGATCTTTGTGTACAAATCTTTGCCTGTGGTTATTTCCTGAGAGTAGATTCTAAGAAGAGGCATTTTCAAGTTAAAGGGTATGAAGTTTTACAAGGTTCTTGCTGCATATTCTCATTTCTTTTTCTAGAAAGCTTATAACATGCTCCTTGGTCCTGTCTCTATAGTTTTGTCTGTTTTAAATGGTTTTCTTAATCTGAATTTCTAAATTTTAGTAAATTTGTTCAGCTTTTTGAAGAATTTTTATGTCAAGTGTTTTCTACTAAAGTATTTCTTACTGATTTACAAGATGTTTTTATTATGTATTATTTTAACCCTTTGTCATCTGCATTATAAGGCATTTTTCTCCTGATTTTCCTTTGGCAATGGCCTGTGAGTTGGTCTTCCTTTCAGCAGGTTTAATCTATTCTGCCTCAAATTCCAGGAAGACCAACATGGCTATAAATTACATACATATTTGTATGTCTCCTTGTAACACGGAGTACCAAGTTTTAAACCTTTGATGAACTTCATATGACTAGAAATCACCTAGGAGGTATGCAGACTTAGATTTGGAACTCAGTGTGACCTGGGTCTTCGTTTGTAAACTCTATATTCAGTATTAATGTAGTAGTCTGTCCTTTCAGAAACACCTTTAGTTTAGTGACACATTCTCCTGGGTGAAAATCGGCTCTGGATGCAGTCATCTACTTGCCATCTACAGAGTAGGAACATACATTTCAAGCCTCTGGCTGGTGGTGCTGTCTGTGTAAGTGGAAGTGTGTGATGGCACTGTGTTACTATGTTGGTCTGGAATTTCTTCTGCTTTCCACCTTGTCCAGATCCTGGCCTTCCTTTAAGACGCTTATCTGCTTCCAATCTTTGTCATGGATTCCTCCTTAATCATTTTAAGCAAATAGAATTCTTTGCCTTTCCTGAGTCCTAAGTGTTCATTTGCACCTTTTCAGCATTTTTTGCATTGTCTATTTTGATTTTTTTTCCTTTTTTTTTTTTTTGTGAGAAATCTTAAATTGTTCACTTGTTGTCAATTTGCCTTATATAATTTTATTTTGTCTTCCATAGGACCTGTGTGGAAATAAAAAAAGCCAATTCACTTAACAGTTTTACTGGGCATTTAGTGGATATTTTTTAAAAAATTAAATCTGTTGATTCTGTCTACCATGTCCACAGCTTGTATAATTCTATAGTCTTTAATCTCTAAACTTTGGTCTTTGGTTGTCATAAATTGGAAAGGTCCTTCTCATGCTAGCTCTGCTCCTGATAGTATCACCGCCCCATTTTTTTTATTGTTGGTAGATTGTTTTGGATTGTCAGCAGGGCCAGTTTCATGTGTATTCCCATTAAGATTATTATTAGTCTAGTTTTTTTTAATGATAGACTTTGGATCTGGTGGGTGTGTGATACTTTGTAAAATTAAATAGGATGCCTGTAGAAGTGTGGCTAGCTTCTTGTTTTTCATCTAGATCTCTGCTTCAGACCAACTGTCTCAGGCCCAGAGTTTAATCCTAATAGCCTGACTTGTTTCTCCAAAAATTAAGGAGAACTTGAGAATGACACTAGGCAATAAGAAGGCCCAGCCTGAATTAGATGCCAGTCTTGTTGAGTAGTAGTCCTGGGGATATTTCTATTCCTGCTTAAACCAGCACCCAGGAAAGAAAATAACACCATATTCTGGGGAGTGTAAAGGGGTTGGCGGGGCAGTGCAGCAACATCTGTCACTCCATTGCTTGTCAGGATTATTTAGCTGATTTGTCTGACTGGGCAGGTGTCCCCTCTCTCCCCCAGTGCTCCATGTGCATCCCTCTTGAAGCTTCGCACTCTGTTGAAGAGGACACTCATCCCAGGTAGAGGGGGGATGGGAAACTGGGCCAATTGAATCTGTCCTTTTCTTACCATCAGATCAGGACACTCAGCTGGGATCCATTGACTTCCTGAGGTCCATGGCCTCCGTGAAGTTCTTGCCAAGTTTTGTTTATGCATTTGTACGTTTCTTGGGGAAAAGGGTCTGCACCTTTCTTCAGGTTCTTGGAGAATCTGTAGATGCACTGTGGCACTAGAAAATGCTGTTTGCTGTTTCTTGGGTATTTTTTAAGCAAGAGTCACAGGAAATTAGAGAGGCAAGTAGAGTGGGAGGATGACCACAGTCCTGAACTCTTTCTTGTACAGAAGGTCTGTTTAGATGTATTTGGTACACGAGGCAGGCCTCAGAAGTTCTGGTCTCTGTTTCTCAAACAGGAGTAATAGAAAGCTTAGACTTAGAAAAGAGAGGAGACAGATTAGATGACATAGGGCAGGAGTGGCAGTTTGAAAATACCTTGGTTTTGCCACTAGCAAGCTCTGCAACAGTGCTATATCATTTAGGGATCTTAATCCAGTTAGTAAATGAAAAGGGCTGAAAGACATTTAAAGCTCCTCATGTCTGTGACACACATTCTGGAAGAACTCTTGGTCAGGGATATTGAAACTGCTCTTAGTTTAAGGGAAAGGAATCCTCTTTTGCCTTTCTCTAAATGCATGGCTCTGAGAGAGGAAAAGGAAGCCAGTTTCAGATGCTGCCTATGTTGTACCATCAGTGTATTTCAGAACAGGTTCGAAAGTTTGGTCTTGACTTTTTAGATGGTAAAGGAACATTTAATCTTCAGCATATTGTAATTGAAGCTTTGTTCCTTGGTATGAAATGGTTGACAGCAATTTCTAATGTATGGGATTTTTTTTGAGATGGTTTCTTGTGGCCCAGGCTGGCTCCAAACTTGTAGTGTACCTCAGGATGGCCTTGAATTCTTGATCCTCCTGCCCTCATCTTCCAAGTGCTAGGATTAAAGCATGCCTGGCTGTAGCAGTTTTATATGGAAAAAATATGGACCTATTTGGTTAAAAATTATTTCTTAAGCATTCTTAGATACATATAAATTTCATCTCATTGATTTGAATTTTCCCTTTTATTGAGTTAGCTGTGTAAACCAAGAATTCTTGAAAGTTTTGTTTGAACCACATTATTCCAGAATGAAGAGAATAATTTGAAATCCTTTAATGTGTTTGCAG
Seq C2 exon
TCACTATTTAGAAGCAAGATGCTTGAATGAGAGAGATTATCGGGATCGGAGATACATTGATGAATACAGAAATGACTACTGTGAAGGATATGTTCCAAGACATTACCATAGAGACATTGAAAGCACTTACCGGATCCATTGCAGTAAATCCTCAGTCAGAAGCAGGAGAAGCAGCCCTAAAAGAAAACGTAACAGACACTGTGCGAGTCATCAGTCACATTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003714:ENSRNOT00000005048:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]