RnoEX0022786 @ rn6
Exon Skipping
Gene
ENSRNOG00000000463 | Col11a2
Description
collagen type XI alpha 2 chain [Source:RGD Symbol;Acc:2373]
Coordinates
chr20:3835865-3840674:+
Coord C1 exon
chr20:3835865-3836056
Coord A exon
chr20:3838130-3838309
Coord C2 exon
chr20:3840615-3840674
Length
180 bp
Sequences
Splice sites
3' ss Seq
CCCTCCCGGTCCTTGGGAAGGAG
3' ss Score
2.91
5' ss Seq
GCCGTAAGT
5' ss Score
10.11
Exon sequences
Seq C1 exon
GGTGATGTTCAGGAACTCCTCATTGTCCCGGGCGTCCAAGCTGCCTATCAGTCTTGTGGACAGAAGGACCTGGAATGCGAGAGAGAACAGAGGGACGGGCCTCAGACTCAGAAGCCTCACAGGGCCCAGAGATCTCCAAAGAAGGAGCCAGCCAGACTTCATAAGCCACAGAACCAGGAGCCCCAGCAGCAG
Seq A exon
GAGCAGACAGATCTCCAGGTCCCCCCAACAGCTGACAGTTTCCAGGCAGAGGAATATGGGGAGGGAGGCACAGAGCCCCCAGCAGGGTTCTACGATTACACCTATGGCTATGGGGATGATTATCGTGAGGAGACCGAGCTTGGCCCTGCCCTCTCTGCGGAGACAGATCACACAGGAGCC
Seq C2 exon
GTTGCCCACGGACCCCGGGGGCTAAAGGGAGAGAAGGGAGAGCCTGCAGTGCTGGAGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000463_MULTIEX1-4/4=C1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.707 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0221019=Laminin_G_2=PD(7.3=14.1)
A:
NO
C2:
PF0139113=Collagen=PU(1.7=5.0)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGATGTTCAGGAACTCCTCA
R:
ACTGCAGGCTCTCCCTTCTC
Band lengths:
242-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]