RnoEX0022787 @ rn6
Exon Skipping
Gene
ENSRNOG00000000463 | Col11a2
Description
collagen type XI alpha 2 chain [Source:RGD Symbol;Acc:2373]
Coordinates
chr20:3843392-3844913:+
Coord C1 exon
chr20:3843392-3843445
Coord A exon
chr20:3843984-3844028
Coord C2 exon
chr20:3844869-3844913
Length
45 bp
Sequences
Splice sites
3' ss Seq
TACCCTGTCTTGTGTTTCAGGGA
3' ss Score
12.27
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
GGACCTAGAGGACTCCTTGGCCCTAAAGGCCCTCCTGGTATTCCTGGGCCCCCG
Seq A exon
GGAGTCCGAGGCATGGATGGTCCCCATGGCCCCAAAGGGAGCTTG
Seq C2 exon
GGCCTCCCCGGACCTCAGGGTGCCATTGGACCTCATGGAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000463_MULTIEX2-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(19.5=100)
A:
PF0139113=Collagen=FE(16.1=100)
C2:
PF0139113=Collagen=PD(9.1=46.7),PF0139113=Collagen=FE(18.4=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACCTAGAGGACTCCTTGGC
R:
CTCCATGAGGTCCAATGGCAC
Band lengths:
94-139
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]