RnoEX0022979 @ rn6
Exon Skipping
Gene
ENSRNOG00000003897 | Col1a1
Description
collagen type I alpha 1 chain [Source:RGD Symbol;Acc:61817]
Coordinates
chr10:82754312-82754709:+
Coord C1 exon
chr10:82754312-82754365
Coord A exon
chr10:82754502-82754555
Coord C2 exon
chr10:82754656-82754709
Length
54 bp
Sequences
Splice sites
3' ss Seq
TTATCACCTTCTCCCCACAGGGT
3' ss Score
12.45
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GGAGAACCTGGAAAGGCTGGAGAACGAGGTGTCCCCGGACCCCCTGGCGCTGTT
Seq A exon
GGTCCCGCTGGCAAAGATGGCGAAGCTGGAGCTCAAGGAGCCCCCGGCCCTGCT
Seq C2 exon
GGTCCTGCTGGTGAGAGAGGTGAACAAGGTCCCGCTGGCTCCCCTGGATTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003897-'46-34,'46-33,51-34
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(5.7=27.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAACCTGGAAAGGCTGGAGA
R:
TGGAATCCAGGGGAGCCAG
Band lengths:
105-159
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]