RnoEX0022986 @ rn6
Exon Skipping
Gene
ENSRNOG00000003897 | Col1a1
Description
collagen type I alpha 1 chain [Source:RGD Symbol;Acc:61817]
Coordinates
chr10:82755694-82756498:+
Coord C1 exon
chr10:82755694-82755801
Coord A exon
chr10:82756147-82756254
Coord C2 exon
chr10:82756445-82756498
Length
108 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTCCCTGTCTTTAGGGT
3' ss Score
12.67
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
GGTGATACTGGTGCCCCCGGAGCTCCTGGTAGCCAGGGTGCCCCCGGTCTTCAGGGAATGCCTGGTGAACGTGGTGCAGCTGGTCTTCCAGGTCCTAAGGGTGACAGA
Seq A exon
GGTGATGCTGGTCCCAAAGGTGCTGATGGTTCTCCTGGCAAAGATGGCGTCCGTGGTCTGACTGGTCCCATTGGTCCTCCTGGCCCTGCTGGTGCCCCTGGTGACAAG
Seq C2 exon
GGTGAAACTGGTCCCAGTGGTCCTGCTGGCCCCACCGGAGCCCGTGGTGCCCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003897-'62-42,'62-41,64-42
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(51.7=86.1),PF0139113=Collagen=PU(38.7=80.6)
A:
PF0139113=Collagen=FE(46.7=100),PF0139113=Collagen=PU(3.3=5.6)
C2:
PF0139113=Collagen=PD(10.7=44.4),PF0139113=Collagen=FE(28.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]