RnoEX0023136 @ rn6
Exon Skipping
Gene
ENSRNOG00000007657 | Col27a1
Description
collagen type XXVII alpha 1 chain [Source:RGD Symbol;Acc:735115]
Coordinates
chr5:79114481-79115770:+
Coord C1 exon
chr5:79114481-79114534
Coord A exon
chr5:79114715-79115562
Coord C2 exon
chr5:79115717-79115770
Length
848 bp
Sequences
Splice sites
3' ss Seq
TTTTTCCTCACTACCCCCAGGCT
3' ss Score
9
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
Exon sequences
Seq C1 exon
GGTGAACAAGGGGTGCCAGGTGTATCGGGAGATCCTGGCTTCCAAGGAGACAAG
Seq A exon
GCTGTCCTTCTGAGGCCACATCTTTGTTCTGTTCTTATATGCCCGTGGTTTCCAGCTGTTCTTAGGGACAAGTCCTGGTGCTTCACGCAGTGGCACGCACAGGATCCAGGTCTGTGGGCCACTCTGACACTCTCCTGCTTTTCCTCCCCTTGGCTGTGTTCCGACACACTAAACTATCCTGGGAACCTCAGCCTCTTTGAACACTGCTTTTCTTTTTGAGCAGAGCCCCTGGCCTCTGTACCTCTCTGATCAAACACCTTTCCCCACCCCCACCTCTACTTTCTCAGACAGAAAGCGGCCTCTGGTGCCCTGGGCAGATGTCTGTCTCTCACTCGGAGTACTCGCTCCTTAGCTTGGGGACCCATGCTTAGCTTCCTGCAGACTGAATCCCTTGAGGAACAGGACGCTAGACTGCCTGACAGCTCTGCTGGGGTCCTGCACTCAACAGTGACAATTAAGGACAAGTTGGCCAGAGGGAGGGAGAGGAGGGGGGAGGGACTAAGTGTGCTGACAGAAGGAACAAGGGATGAGCCATCGAGCCCTTGATCTCCAGAGGCCAGCTGCGGCCTGCCCAGAATGGCTCCTCTGTCTGAGTTGCACAGTGCGGCCACATCCGGCCTTCTCCTCAGCCCACCAGACCCCCGTCCCTTCCTCCCAGCCAGCCTGTCCTGACGCAGTCAGTGTCCATGTGTGTTCTAACATTCAGGCCTGGCTGTTCTCTTGGGCTCGGGTCTCACGAGGCCTGGAGGGCACTGCAGGACTAATATGGACCAAGATTCTCCGGGTCCTGTACTTAGGCCAGGGCAGCTCCCAATCCTGGTACCCAGGTACCCAGTGTTGGGATGCAG
Seq C2 exon
GGGAGTCATGGCTTGCCAGGGTTCCCAGGTGCCCGGGGGAAGCCAGGGCCTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007657_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.944 A=0.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(21.5=100),PF0139113=Collagen=PU(4.6=16.7)
A:
PF0139113=Collagen=PD(1.8=1.4)
C2:
PF0139113=Collagen=FE(21.2=100),PF0139113=Collagen=PU(17.7=77.8)
Main Inclusion Isoform:
ENSRNOT00000010333fB3394
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]