RnoEX0024405 @ rn6
Exon Skipping
Gene
ENSRNOG00000010903 | Crb1
Description
crumbs 1, cell polarity complex component [Source:RGD Symbol;Acc:1309947]
Coordinates
chr13:56307692-56311240:-
Coord C1 exon
chr13:56311112-56311240
Coord A exon
chr13:56310942-56311017
Coord C2 exon
chr13:56307692-56307818
Length
76 bp
Sequences
Splice sites
3' ss Seq
CCTCCAATTTTTCATCTCAGTTC
3' ss Score
7.31
5' ss Seq
AGGGTAGGT
5' ss Score
8.1
Exon sequences
Seq C1 exon
ACACAGCAGATTACCCTCAACAGTCTGTGGGAACGAGAAGACAAACTTCACTTGCTACAACGGAGGCAGCTGCTCCGTGTTCCAGGAGGACTGGAAATGTGTGTGCCGGCCAGGTTTCACTGGAGAGTG
Seq A exon
TTCCCACAGGAAAAAATCCATGTTGAAATATAGGTCCAGACAGAATCAAGCAATAAAAAAGAAGAAAAATTACAGG
Seq C2 exon
GTGTGAAGAGAACATCAATGAATGTGCCTCTGACCCCTGCATCAACGGAGGCCTGTGCAGGGACTTGGTCAACAGATTCCAGTGCATCTGTGATGTGGCCTTTGCGGGCGAGCGCTGTGAGCTGGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010903_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=70.5)
A:
NO
C2:
PF0000822=EGF=WD(100=72.1)
Main Inclusion Isoform:
ENSRNOT00000032122fB3568
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTTGCTACAACGGAGGCAG
R:
AAGGCCACATCACAGATGCAC
Band lengths:
183-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]