RnoINT0041815 @ rn6
Intron Retention
Gene
ENSRNOG00000010903 | Crb1
Description
crumbs 1, cell polarity complex component [Source:RGD Symbol;Acc:1309947]
Coordinates
chr13:56307692-56311240:-
Coord C1 exon
chr13:56311112-56311240
Coord A exon
chr13:56307819-56311111
Coord C2 exon
chr13:56307692-56307818
Length
3293 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
3' ss Seq
CTTTTATATCCATTTTCAAGGTG
3' ss Score
8.44
Exon sequences
Seq C1 exon
ACACAGCAGATTACCCTCAACAGTCTGTGGGAACGAGAAGACAAACTTCACTTGCTACAACGGAGGCAGCTGCTCCGTGTTCCAGGAGGACTGGAAATGTGTGTGCCGGCCAGGTTTCACTGGAGAGTG
Seq A exon
GTGAGTTACACTGGAACTTTATGGATAAAAGTTCTGAGCTAAAGAACAGAGGGATTGCCCAGAGTTCATTTTCTCCTCCAATTTTTCATCTCAGTTCCCACAGGAAAAAATCCATGTTGAAATATAGGTCCAGACAGAATCAAGCAATAAAAAAGAAGAAAAATTACAGGGTAGGTCAAAGTATAGAATATTTTACCAGCCAAGACTTCAAATAAGAAAATACGGTTTTTAAAATACATAATGTCTTATTTATTCTTTCCTATAAGTACTTCTGGATTCACGGAGTCCTTCCCTCCCCACGCTAACTCTAATATATGATTTCAATATGGTTGCTTTTGAAGTAAAATAAAACACACCTAAAAGTTACCTTATTTGATTGACTTCAACCCAAAGTATATGTACTCCTTACCCGGGCAATTCTTTCGTTCACAGAGAAGCCCTTTCACTGTTCACCTAGTCAGAGGTGCCCAGCTAGTGATACAGGGAAAGTTGTGTATGCATTTGCCTGGCTGGGGTGTGATCAAGGGGAAGAGAAGACATGCTTTGATCAGATGCCCCAAGAGATCTCCATCCCCAAACTGGTAAAAACCAGGACTCTGTGGACACAGGCATTATTTAGACAACATTACCATTGGTTTAGCACTAATCCACCCATATACCTACATTTCAGAGCTCTGTGAGCAAGATTTTGTTGTTTTTATTTTGTATGTGTGCATGTATGCATGTGTGTGTATGTGTGTGTGCATGTGTGTATATGTGTGTGTATGTGTGTATATGTATGTGTGTGCATGTGTGTATGTGTGTGTGTACACGTATGCATGTGTGTGTGCATGTGTGTATGTATGTGTGTGTGTACATGTGTGTGTGTGAAGGTGAATGCGGATTAAGCTACAGATTGATGCTGAGTTAAATGTATGCAGCAATGAAGGTTGAGCTGCCATCGAAGCTGGTGCTGCTCTACTGGGAAAGCTGACGTGAATTTGTGAGTAAGCGTTTGCTCAGCACAGCTAAAGCAAAATACAAAATGTGCTTCTCCATCTCCTAGAATAAGGTACAGGCAGTTGAGACACACATGTGTGCAGAAGGAATTAGAGGAGTCCCATTCGTGTTCCAGCTTATCACAGCATGACATGCCTCCGATTTCATATCCTCAAAATATTGTAAATAGATCTTTGGCCTAAACATAAATAACTCTTTACTATCTTCAAATGCTCGTTGCCTCCTGGCTTAATAATATTATCTCCCCTTAATAGCACAATGAATAGTATTCATCCAAAACCCTCAGTTATTTTTTGCAGTAAATATTTCCATTTCCTCCAATGTATATCAGTTTTGAAAGTCATACTTGCCATTTAAATTATTGATTGAGATGAAGGTGGGATTACTAATTTTCCTTTCTTCCCAGGGAAGATTGTCTCCACATAGACTTCACTAGTACAGAGTTATTTCTAACAGTGAATGTGCGTTTAATATATTCTGATTTTGCAAACACATTAATCATCATTAATGAATTCAGGAGATCCTAATGGCTTTACTTTGACTTTCCATATATTAATTATCATCTTTTTCATTTGTTTTTATCTCGCTTTTCTTTGGGGACAGGATCCCATTTGTAGCCCTGGCTTGTCTAGAGCTTGCTGCTACATTGAGGAGGCTGGCCTCGAACTTGCTATCATTCCTCTGCCTGACTTGTCTCACTGCTGGAATTTGGGGAATGAGGCACCACATTCAGTCCTATTATTTTCTAATAAGGCTCCCCTGCTGTTTTCTATGCATATGCAGCATCCACTGTTTTGTTCAAAATGGAAATCAGTAAGGGAATAAAAGAAAGCAGGAGGAAGGGCTGGAAATGTTTCGGCGTCTCCCAAGGCCTAGAGCTGTGAGACTTCCACACAGCGGAGGATACTGAGAAGCTGTTGAGCTTGCCTAAGCTTCCAGCTTCATGTTGTCAGTCAGTCCAGCACGTTCAGGTGATGGATGGTGTGAATGCTGGCCACCCATACACAGAGTACTTGGCAAGCTCCTGAGAGTTGTCAAGTTTGGCTGGGATCTAATCAGAGAAGCCTCCTTCCAGCCCAGAAGCCAGGGCCGTAAAAGGAAAACAGAGAGTCTCAGCTATGTTCGCTATCCCATGGATAAAGAGCTATTTTCCTTGGACTGAATCTCCATTTCCCATCACACCATCTCACAGCTCCTCCACCTCGGCCCTTGCATTAGAGCCTGGTGAGAAGTCTCTGCACACACAGACATTCTACGTTGGGGGGAAGTGGAGATTAAAAACAGTTTATAGCGTAAATGGTTCTGCAGAGTTTTTCCTAAGATAGCGCAAATGCCTTCACCACTGCTCAAGCCCTTAGCAGAGTATCTGGCACACGGTAAATAAAACTACTGAACTAATCCTTGGAGGGCCAGAACAAGGAGTTGCGACTATACATAATAACATTCCAAAAACCTAAAACTTCAATGAAAGCGTCAATAGAACGATGTGCCATTTGATTATTTCAACCTCATTTGAACATACACCATTGTATACACAGTATCAACATCACACATATACACACTAACACACACACACACACACACACACATCCAACGTGTCTGCCATTTTTGTGTTCATATATCAGTTTTTTAAAAAATCAAAAGAAAAAAATATCGGTTGAAAAGGAGGCAGACAGTACTCAAGTACCTTAGAGTGGACATTGTTCTTTTTTTCCCAGAAAAGTCATATAGGAAAACACTTACTAGAACGTTTAGAGTTCCTTGTCACTACTTAGACCATGGATTTATTAACTGGGTTCTTCCTTACTTTTCTAAATGCTTAAACAAATTGAATTTCAAAGGAAAATAATCCAACATCTCCTAGAATTAGCCAAGTCTATCCTGAGGCAGAGAAACTCTAGAACTTTCACAGCCTGTGCTGTCTCTGCCCTGTAGATTCCAGGCTAGCAAAGTCAGCCCCCCAGTATCTATCCAATAAAGCTGACATTTAAAAGGTGGCAAACTGACCCACGCTCCTGAGGGACAATCAGGACTTCTAAATATTTGCAGTCATTTTCTTATTTGAATTAATTCAATGTGTACACCTATGTCTGTGCATTTGTGCACAGACAAATTTCCACAAAACTCAGAATGTATTAAAGGGCTCTTAAGGAACCTCTGAAATTATCCAGTGTGTTTAATTGGGTAGATTTGGTGCAAACTCTATGCCATGTTAGAAAGAGGGACAAACCATTGCTCAATCTAACAATCCGCCTGCCTGACCTGGGGCATCTGCTTTTATATCCATTTTCAAG
Seq C2 exon
GTGTGAAGAGAACATCAATGAATGTGCCTCTGACCCCTGCATCAACGGAGGCCTGTGCAGGGACTTGGTCAACAGATTCCAGTGCATCTGTGATGTGGCCTTTGCGGGCGAGCGCTGTGAGCTGGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010903:ENSRNOT00000032122:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=70.5)
A:
NA
C2:
PF0000822=EGF=WD(100=72.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]