GgaINT0034839 @ galGal4
Intron Retention
Gene
ENSGALG00000002287 | CRB1
Description
crumbs family member 1, photoreceptor morphogenesis associated [Source:HGNC Symbol;Acc:HGNC:2343]
Coordinates
chr8:2494710-2497968:-
Coord C1 exon
chr8:2497840-2497968
Coord A exon
chr8:2494837-2497839
Coord C2 exon
chr8:2494710-2494836
Length
3003 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGA
5' ss Score
8.94
3' ss Seq
TTTTGCACTCTTCCCTGTAGGTG
3' ss Score
11.82
Exon sequences
Seq C1 exon
ATATCGAAGATTACCCTATACAGTTTGTGGGAATGAAGACAGAAATCTCACCTGTTACAATTACGGCAACTGTACTGACCTTGGAGGCAAGCTGGCCTGTGTGTGCCTGCCAGGATTTGCTGGAGAACG
Seq A exon
GTGAGATGCTTCACTGTATGAAAAAGTTCTTCCAAAAGTCATTCCAAAGGTTCTAGGGTGTGCCATCTATAGGGAAATTACCCTCCTGCAGAAATACAGAAAAAACTGGTTTTCAAGCAGAGCAGTTCTTTGCCCGAGTGCCTTTCAGAGCCTGAAAGTATAACAGTCTTACTCAGGCAAAAAATACAAATTAACTCAGCAAGGGTCAGTCCAGTACAGCACCACTAATGCCAGTACAAGCCTTTATTTCTTAGTCAATTTTGTACACCTCCTACTCTTTGGATTCAATGCCAATCTAGTATATAGGCAAACTGGAATGTTACCTTTCTATATATAAGCACATATAAACACACATATCCTATTCATATATGTATAAAAATCAGCCAGCATACAATGACACATAATATGCCAAGCTGTTCTATTTTCACATGTATCCATTGTGAATATACAAACTATTCCCCTACAGGGATAATGACATGAAATATGTGGTGGTGTTATTTTCTTTACTGAATGCCAAAATATGAAAACAGAATTATTATTTAAAATCAAAGTTGAGAAATACTTCTTACATATTATAGTATAAAAAGGAAGGGGCCATCAGCCTTCCCAGTTTGTACCTTGTAGCAGGTCACTGCACGATCACTTACCACTTGATTCTCTACAAACACCTCCACAGCAGGGAGGTCTTCAGGTCTCAGTGCATCAGGTGTTGTAAAAACATAAGAGGACACCATCCCAGTCATAATACGGCCTGAAGTAACGGTAAATTTCTGAATAGTAAGAAAAGGCACACAGAACATAAACAGAAAACTAATGACTTTTGCTTGCAGTGCAATTTAACACTACCTCAGAGTGCAATATCCAAACATTCGGTAGGACCAAGTTGTGCTGGCTTTGCAAACATAAAGCAGTTTTCAACAAATGGTTTTCATTCTTTCAAAATCCGATTAATTCACTGACTTTGTGGAACCTGTACAGTAAACCATAAAGGACAGATGAAATGAAAATTTCCACCCACTCATTGAGCAGTGTAGTTGGCTGACGCATCTGCACCGTACTCTTTAACTCAGCCAGAAGGCCTGCCTGCCACACCACAGAAAAAAGATTAAGAAATAAAATAATAAAAAAATAAAAGCATATTCTCAGGCAGTTCTTCAGTGTGTATTTTTTTTCAGGACTTCAAGATAAGGCAAAGTGCTTTTTCCTTCTTCCTTCCCCTGTCAGGCAACTCGCTAAGTGCAGCTCTGGGAATGAGCCTTGCTTACATCCACCCCACTGGCTGGCAATAATGTCTATTTTATGGTTCCCGTGATCCTCATATTGAGCAGCAGCCTTGCACCAAGCATACTGCACTGTAACTGACTATCAAAGCAAGGCATTCTTCTCAAATGTCTAAAATTGACTATTTGTCCTCTTTTCCTCCAGGCTGACACACTGTAAACCAGAAATATTTCTGTTTGCAGAACTTAATACATCAGAAAAGAAAATTTCACCTCAAACGTTTGACATTTATTTTTTTAGAACAATTTCAAATGTATCAGTTAACAAGAAAATTCAAAACAAAACCCTTCAGTCTATTTATTGATTAGAAAAGTAAAGCAGGCATTTTGGCTTCAAGACAGTATTTCATCCCTAAGAAAAATAATGATATACAACATTAAAAAAAAGGGGGGTGGGGATGTCTTTCTATGTCAATCAATTGACTCGAGATTACAAGGAAAAAAAGAAATAGGAAATAATAGGTGGAAAGAAAAACTTGAAAAGATTAAAAAAAAGGAGATGTAGTTGTCTCTTGAAAACAGTTATTTCACTGAATTCAGGCAGTTTTCAAAATCACCATGGGGAGTTAGGTTTAAAAGTCTTCCTGATGTTCAGGAGGACTCAGGTAACAAATTCCCTGCACTATTTTGTTTTCCAGTTTTGCATAGGGAAGTTCATAGCTATATAATTTTCACGGATTGAATTAATACTTAATTTTCAGCTTTCTGAAGTATGTAAATATAATTGATCATTGAAGCAAATGACTGAAATTTTTTAATGGATTAATAAAGAAAACCATCTAAGAGTGTTTAAGGCAAAGAACAGCACATCTCCAATGTAAAACTAACAATGTCTTGAGTGGTTATGGATATGATTAAACAAAACAATTCCTGGTAATTTTGAGTGAATTTAACACATTCAACTTCAGTGGTAACTGTGATTCTTTATGGGGAAAAAAATAGTATTGACCATTATCAGTATTTGAAAGAATGAAGGCAGGGAATTCAGGGGAAGCTTTGTCAGGACAGAGAATCACCAAATCATTACCAGTTTTTAAACAGTTGCAAATGCTTTTCATTAATGTTCAGTTGGTTGCCTTGAGAAATTATTAGAGCTCAAATTTCCCTTCTCATCAGAATTACTGAAAAGCATATAATGATACTAATTTAAGCTTTTAAAACCTTATTCTGCAACTGTCTTTCTTAACATTCTTAGTGCCCACACCCTCTCAGAGAGACCACATAGGAGGCTGTGCTGGACATCTACTGACATTTCAAATTGAGAAAAGAAATGGGTGAACATTCCCAGGGGCATTCAGTTGTGAAAAAATATGCTTTTGTTTAACTTAAATCTAAATTATCATGAAGGAAATTGGGCCCTCAGCTTGCAGTAATGATGAAAACGGACTAGCAAGTGTTCAGCAGGACTTGCGCTGTATCCAACTCTAAAACCACACGCCAGGTTTCATTTCACTTTGCTAAGCACCATTCACCAGGAAATGTGCCACAGAAATGAAATTTCTGGCTTAACTGTCTATGTTTGAAAGTAACACGGGAAGTTCAAGATTTAAAAGAGGCTAATCAAGTAGTTAATAAGATTCTCTGAAGACCACAAACACGTGGAAATATACTACAGATTTCAAATGGAGCAGCCTCATTAAAAGTTACTGAAATAAAAATGTGCCGGTTTTATTCATTTTATACCTGATGTCAGGATTTCACTTTTTTGCACTCTTCCCTGTAG
Seq C2 exon
GTGTGAAAAGGACATTGATGAGTGCAGCTCTGATCCATGCCTGAATGGAGGCCTCTGCCAGAACCTGCTCAACAAATTCCACTGCCTCTGCGACGTCAACTATGCTGGAGACCGCTGTGAGATCGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002287:ENSGALT00000003596:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=72.7)
A:
NA
C2:
PF0000822=EGF=PD(0.1=0.0),PF0000822=EGF=WD(100=72.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]