DreINT0051759 @ danRer10
Intron Retention
Gene
ENSDARG00000100506 | crb1
Description
crumbs family member 1, photoreceptor morphogenesis associated [Source:ZFIN;Acc:ZDB-GENE-050208-382]
Coordinates
chr22:23482650-23483069:-
Coord C1 exon
chr22:23482947-23483069
Coord A exon
chr22:23482777-23482946
Coord C2 exon
chr22:23482650-23482776
Length
170 bp
Sequences
Splice sites
5' ss Seq
CTGGTGATT
5' ss Score
3.02
3' ss Seq
ACTATATATTTGTCGTACAGGTG
3' ss Score
7.01
Exon sequences
Seq C1 exon
ACCGCCAAAGCTCCCGGTGTCCATCTGTGGCGATGAACAGCAGAACTACACATGTTTCAATGGGGGGAACTGTTCTGACACCAACATGCCGTGCGACTGCCACCCTGGGTTTTCGGGTCACTG
Seq A exon
GTGATTATTCCCTTTCTTTCTTTGTTCGGATACATACATGTTAATGAATCGGAGGGTAGTAGCTATGAATATTCAGTGCACTCTAAATTTGCTCATGACAGAACCAATTTTGGAATGAATTTTACAATGCTCATATTCACAATCAAAATTACTATATATTTGTCGTACAG
Seq C2 exon
GTGTGAACTAGAACTTGATGAATGTAGATCCAATCCTTGCAAGAATGGCGGCTACTGCCAGAACATGGTCAACAGGTTCCAATGCGTCTGTGAAATGACTTTTGCCGGCGAGACCTGCGAAGTGGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100506:ENSDART00000166915:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0000822=EGF=WD(100=72.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAAGCTCCCGGTGTCCATC
R:
GTCCACTTCGCAGGTCTCG
Band lengths:
245-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]