RnoEX0024847 @ rn6
Exon Skipping
Gene
ENSRNOG00000007057 | Csmd2
Description
CUB and Sushi multiple domains 2 [Source:RGD Symbol;Acc:1565728]
Coordinates
chr5:146617486-146624304:+
Coord C1 exon
chr5:146617486-146617688
Coord A exon
chr5:146618630-146618986
Coord C2 exon
chr5:146624113-146624304
Length
357 bp
Sequences
Splice sites
3' ss Seq
TGCTTCTTTTTTGAGTGCAGGTC
3' ss Score
4.71
5' ss Seq
TGTGTGTGG
5' ss Score
-5.13
Exon sequences
Seq C1 exon
GCTCCACTTCCTTGTGTTTGACACAGAAGAGGTCCACGACGTGCTACGCATCTGGGACGGACCTGTGGAAAGCGGGGTTCTCCTCAAGGAGCTGAGCGGCTCGATGCTGCCCAAGGACCTGCACAGCACCTTCAATTCAGTCGTCCTGCAGTTCAGCACGGACTTCTTCACCAGCAAGCAAGGCTTCGCCATTCAGTTCTCAG
Seq A exon
GTCTTGGAAAGGACTGCAAGCCAAGCGTGAGAGTGATCTCAGTAATCGCTATTTAATTAAGTGTGCACAGCAGTGACCGGTTATGGAACTACATGACAAAGAGCTGCCCCAAATTGTCAATATTCAAATGCCCGGGTTCTGAGTTGGCCGATCTTCCCAGAACTCAGAATCGCCTGGCTTTCTCTTCTGTCTCTCAGCTTCCTGAGCAACTGCGGCTGAGGGAGTTCTGTATTCATGGATTCAACCAATCCTAGAGCAAAATATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
Seq C2 exon
TGTCCACAGCAACCTCCTGCAACGACCCTGGAGTCCCACAGAATGGGAGTCGGAGCGGCGACAGCTGGGAAGCCGGTGACACCACAGTGTTCCAGTGCGACCCGGGCTATGCTCTGCAGGGAAGCGCAGAGATCAGCTGTGTGAAGATCCAGAATAGATTCTTCTGGCAGCCCAGCCCGCCCACGTGCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007057-'28-36,'28-35,29-36
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.169
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(61.7=95.7)
A:
NO
C2:
PF0008415=Sushi=WD(100=87.7)
Main Inclusion Isoform:
ENSRNOT00000078588fB3636
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGAGGTCCACGACGTGCTA
R:
GCTGGGCTGCCAGAAGAATC
Band lengths:
354-711
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]