RnoEX6023437 @ rn6
Exon Skipping
Gene
ENSRNOG00000007057 | Csmd2
Description
CUB and Sushi multiple domains 2 [Source:RGD Symbol;Acc:1565728]
Coordinates
chr5:146617486-146628954:+
Coord C1 exon
chr5:146617486-146617688
Coord A exon
chr5:146624113-146624304
Coord C2 exon
chr5:146628816-146628954
Length
192 bp
Sequences
Splice sites
3' ss Seq
CTTCTGTTCTCTTGCCTCAGTGT
3' ss Score
8.86
5' ss Seq
TTGGTACGG
5' ss Score
6.56
Exon sequences
Seq C1 exon
GCTCCACTTCCTTGTGTTTGACACAGAAGAGGTCCACGACGTGCTACGCATCTGGGACGGACCTGTGGAAAGCGGGGTTCTCCTCAAGGAGCTGAGCGGCTCGATGCTGCCCAAGGACCTGCACAGCACCTTCAATTCAGTCGTCCTGCAGTTCAGCACGGACTTCTTCACCAGCAAGCAAGGCTTCGCCATTCAGTTCTCAG
Seq A exon
TGTCCACAGCAACCTCCTGCAACGACCCTGGAGTCCCACAGAATGGGAGTCGGAGCGGCGACAGCTGGGAAGCCGGTGACACCACAGTGTTCCAGTGCGACCCGGGCTATGCTCTGCAGGGAAGCGCAGAGATCAGCTGTGTGAAGATCCAGAATAGATTCTTCTGGCAGCCCAGCCCGCCCACGTGCATTG
Seq C2 exon
CTCCTTGTGGGGGAGACCTAACTGGACCATCAGGAGTCATTCTGTCACCAAACTACCCAGAACCCTACCCACCAGGCAAGGAGTGTGACTGGAAAGTGACCGTCTCTCCAGACTACGTCATCGCCCTGGTATTTAACAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007057-'28-37,'28-36,31-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.169 C2=0.021
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(61.7=95.7)
A:
PF0008415=Sushi=WD(100=87.7)
C2:
PF0043115=CUB=PU(41.5=93.6)
Main Skipping Isoform:
ENSRNOT00000078588fB3636
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAGCGGGGTTCTCCTCAAG
R:
TGGAGAGACGGTCACTTTCCA
Band lengths:
246-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]