MmuEX6096214 @ mm10
Exon Skipping
Gene
ENSMUSG00000028804 | Csmd2
Description
CUB and Sushi multiple domains 2 [Source:MGI Symbol;Acc:MGI:2386401]
Coordinates
chr4:128442698-128452549:+
Coord C1 exon
chr4:128442698-128442900
Coord A exon
chr4:128449087-128449278
Coord C2 exon
chr4:128452411-128452549
Length
192 bp
Sequences
Splice sites
3' ss Seq
CTTCTGTTCTCTTGCCTCAGTGT
3' ss Score
8.86
5' ss Seq
TCGGTACAG
5' ss Score
3.7
Exon sequences
Seq C1 exon
GCTCCACTTCCTGGTGTTTGACACAGAAGAAGTCCACGATGTGCTGCGCATCTGGGATGGACCTGTGGAAAGTGGGGTCCTCCTCAAGGAGCTGAGTGGCCCAATGCTGCCCAAGGACCTGCACAGCACCTTCAACTCGGTCGTCCTGCAGTTCAGCACGGACTTCTTCACCAGCAAGCAAGGCTTTGCCATCCAGTTCTCAG
Seq A exon
TGTCCACCGCAACCTCCTGCAATGACCCGGGAGTCCCGCAGAATGGGAGTCGGAGTGGTGACAGCTGGGAAGCCGGTGATAGCACAGTGTTCCAGTGTGACCCAGGCTATGCTCTGCAGGGGAGCGCAGAGATCAGCTGCGTGAAGATCCAGAACCGATTCTTCTGGCAGCCCAGCCCGCCCACGTGCATCG
Seq C2 exon
CTCCTTGTGGGGGAGACCTAACCGGGCCATCAGGAGTCATTCTGTCACCAAACTACCCAGAACCCTACCCACCAGGCAAGGAGTGTGACTGGAAAGTGACCGTCTCTCCAGACTACGTCATCGCCCTGGTATTTAACAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028804_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.169 C2=0.021
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(61.7=95.7)
A:
PF0008415=Sushi=WD(100=87.7)
C2:
PF0043115=CUB=PU(41.5=93.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGATGGACCTGTGGAAAGT
R:
TTCCAGTCACACTCCTTGCCT
Band lengths:
245-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types