DreEX6073801 @ danRer10
Exon Skipping
Gene
ENSDARG00000001559 | csmd2
Description
CUB and Sushi multiple domains 2 [Source:ZFIN;Acc:ZDB-GENE-030616-39]
Coordinates
chr19:36703517-36724861:-
Coord C1 exon
chr19:36724659-36724861
Coord A exon
chr19:36705836-36706027
Coord C2 exon
chr19:36703517-36703655
Length
192 bp
Sequences
Splice sites
3' ss Seq
TAATATTTCTATTTCTCCAGTTT
3' ss Score
6.72
5' ss Seq
CTGGTATGA
5' ss Score
6.69
Exon sequences
Seq C1 exon
GTTGCATTTCCTGGTCTTCCACACAGAAGAGGTGCATGATGTTCTGCGCATCTGGGATGGGCCTCAGGACGGAGGTGTGCTTTTGAGAGAACTGAGTGGATCCACTCTTCCTCCAGACCTCCACAGCACCTTTAATTCTGTCAGTCTGCAGTTTACAACCGACTTCTTCACCAGCAAGCAGGGATTTGCTCTGCAGTTCTCAG
Seq A exon
TTTCAACAGCTACTTCCTGTAACGATCCTGGCATTCCAACAAACGGCACTCGAATAGGAGACAGCAGAGAGCCAGGGGATCATGTGCTGTTCCAGTGTGATCCCGGATACCTCCTACAGGGGGCAACCAAGATCACCTGCACAGAGATCAACAACCGCTTCTTCTGGCAGCCTGATCCGCCCACCTGTTCTG
Seq C2 exon
CTCCATGTGGAGGGAATCTGACAGGTCCCAGTGGGCTGATCCTGTCTCCCGAATACCCAGAGCCATATCCACACGGCAGAGAATGTGACTGGACAGTAACAGTGACGCTGGACCACATCATATCTCTCAATTTTAATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000001559-'33-35,'33-33,34-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=0.160 C2=0.064
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(61.7=95.7)
A:
PF0008415=Sushi=WD(100=87.7)
C2:
PF0043115=CUB=PU(41.5=93.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCATGATGTTCTGCGCATCT
R:
CACATTCTCTGCCGTGTGGAT
Band lengths:
258-450
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]