BtaEX6019074 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005784 | CSMD2
Description
CUB and Sushi multiple domains 2 [Source:HGNC Symbol;Acc:HGNC:19290]
Coordinates
chr3:112741859-112753164:+
Coord C1 exon
chr3:112741859-112742061
Coord A exon
chr3:112747481-112747672
Coord C2 exon
chr3:112753026-112753164
Length
192 bp
Sequences
Splice sites
3' ss Seq
CCTCTACTTTCTTCTCCCAGTGT
3' ss Score
9.21
5' ss Seq
TCGGTACGG
5' ss Score
8.77
Exon sequences
Seq C1 exon
GCTCCACTTCCTGGTGTTCGACACAGAGGAGGTCCATGACGTTCTGCGCATCTGGGATGGGCCGGTGGAGAGTGGGGTCCTGCTGAAGGAGCTCAGTGGCCCGGCCCTGCCCAAGGACCTGCACAGCACCTTCAACTCCGTCGTTCTGCAGTTCAGCACCGACTTCTTCACCAGCAAGCAGGGTTTCGCCATTCAGTTCTCAG
Seq A exon
TGTCCACAGCAACATCCTGCAATGACCCAGGGGTCCCCCAGAATGGGAGCCGGAGTGGCGACAGTTGGGAAGCCGGCGACTCCACGGTGTTCCAGTGTGACCCCGGCTACGCGCTGCAGGGAAGCGCGGAGATCAGCTGCGTGAAGATCGAGAACAGGTTCTTCTGGCAGCCCAGCCCGCCGACCTGCATCG
Seq C2 exon
CTCCCTGCGGGGGAGACCTGACGGGACCATCAGGAGTCATCCTGTCACCAAACTACCCAGAACCCTACCCGCCGGGCAAGGAGTGTGACTGGAAGGTGACCGTCTCGCCAGACTATGTCATCGCCCTGGTATTTAACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005784-'39-38,'39-37,40-38=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.169 C2=0.021
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(61.7=95.7)
A:
PF0008415=Sushi=WD(100=87.7)
C2:
PF0043115=CUB=PU(41.5=93.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAGGAGGTCCATGACGTT
R:
CGGGTAGGGTTCTGGGTAGTT
Band lengths:
252-444
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]