GgaEX6025170 @ galGal4
Exon Skipping
Gene
ENSGALG00000002602 | CSMD2
Description
CUB and Sushi multiple domains 2 [Source:HGNC Symbol;Acc:HGNC:19290]
Coordinates
chr23:4722405-4727602:+
Coord C1 exon
chr23:4722405-4722607
Coord A exon
chr23:4724900-4725091
Coord C2 exon
chr23:4727464-4727602
Length
192 bp
Sequences
Splice sites
3' ss Seq
GTATTTTTAATGCTCGTCAGTTT
3' ss Score
4.54
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
ACTCCATTTCATGGTTTTCCACACCGAGGAGTTCCACGACGTGCTGAGGATCTGGGACGGTCCGGTGGAGAATGGGATCCTCCTGAAGGAGATGAGTGGCTCCGTGCTGCCCAGCGACGTCCACAGCACCTTCAATTCCGTCATCCTTCAGTTCAACACTGATTTCTTCACAAGCAAGCAGGGCTTCGCCATTCAGTTTTCAG
Seq A exon
TTTCCACTGCCACCTCCTGCAATGACCCGGGGATTCCCCAGAACGGGAGCCGGAGCGGTGACAGCAAGGAGGCAGGAGACTCCATCGTCTTCCAGTGTAACCCAGGATATGCTCTGCAAGGGGAGGCCAAGATCACTTGTGTGCAGATTGAGAACAGATTCTTCTGGCAGCCGGACCCCCCTTCCTGCACAG
Seq C2 exon
CTCCCTGCGGAGGGATCCTGACCGGACCAGCAGGGGTGATCCTGTCCCCGCAGTACCCGGAGCCCTACCCGCCGGGGAAGGAGTGCGACTGGAAGCTGACCGTCTCTCCTGATTATGTCATCGCCCTGGTATTTAACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002602-'33-33,'33-32,34-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.169 C2=0.021
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(61.7=95.7)
A:
PF0008415=Sushi=WD(100=87.7)
C2:
PF0043115=CUB=PU(41.5=93.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGAGAATGGGATCCTCCT
R:
TCAGGAGAGACGGTCAGCTTC
Band lengths:
252-444
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]