RnoEX0025826 @ rn6
Exon Skipping
Gene
ENSRNOG00000042367 | Cyp2ab1
Description
cytochrome P450, family 2, subfamily ab, polypeptide 1 [Source:RGD Symbol;Acc:1586963]
Coordinates
chr11:84507782-84509166:+
Coord C1 exon
chr11:84507782-84507931
Coord A exon
chr11:84508529-84508689
Coord C2 exon
chr11:84508993-84509166
Length
161 bp
Sequences
Splice sites
3' ss Seq
GCTCTCCCCTCTCCTCACAGGGA
3' ss Score
11.85
5' ss Seq
CGGGTAATC
5' ss Score
4.59
Exon sequences
Seq C1 exon
GTGTTATCTGCAGCAATGGGCTTACATGGCGACAACAGAGACGCTTCTGTCTGACGACTCTTCGAGAGCTGGGCCTTGGCAAGCAAGCGTTAGAGTTGCAGCTGCAGCACGAGGCAGCAGAGCTGGCTGAGGTGTTTCACCAGGAACAGG
Seq A exon
GGAGAGCCTTTGATCCTCAGGTTCCTATCATTCGATCCACAACGAGAGTTATTGGGGCCCTGGTGTTTGGTCATCACTTCCTCTCCGAGGAGCCCATCTTCCTGGAACTAATTCGAGCCATCAACCTTGGCCTCGCCTTTGCCAGCACTACTTGGCGCCGG
Seq C2 exon
CTGTACGACATGTTTCCCTGGGCCCTCCGCTACCTCTCAGGACCCCACCAGAAGATATTTCAGTACCACGAGGCTGTGAGGGGCTTCATCCACCATGAAATCATCAGGCATAAGCTCAGGACACCTGAGGCCCCCAAGGATTTCATCAGCTGCTACCTGTCACAAATCACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000042367_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.3=100)
A:
PF0006717=p450=FE(12.0=100)
C2:
PF0006717=p450=FE(12.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGCTTCTGTCTGACGACTCT
R:
GATGAAATCCTTGGGGGCCTC
Band lengths:
257-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]