MmuEX0013321 @ mm10
Exon Skipping
Gene
ENSMUSG00000022818 | Cyp2ab1
Description
cytochrome P450, family 2, subfamily ab, polypeptide 1 [Source:MGI Symbol;Acc:MGI:3644957]
Coordinates
chr16:20313728-20315104:-
Coord C1 exon
chr16:20314955-20315104
Coord A exon
chr16:20314198-20314358
Coord C2 exon
chr16:20313728-20313901
Length
161 bp
Sequences
Splice sites
3' ss Seq
GCCCTCCCCTCTCCTCACAGGGA
3' ss Score
12.44
5' ss Seq
CGGGTAATT
5' ss Score
6.79
Exon sequences
Seq C1 exon
GTGTTATCTGCAGCAATGGGCTTACATGGCGACAACAGAGACGATTCTGCCTGACCACTCTTCGAGAGCTGGGCCTTGGCAAGCAGGCGTTAGAGGTGCAGCTGCAGCACGAGGCAGCAGAGCTGGCTAAGGTGTTTCTCCAGGAAGAGG
Seq A exon
GGAGAGCCTTCGATCCTCAGATCCCTATCATCCGATCCACAACGAGAGTTATTGGGACCCTGGTGTTTGGCCATCATTTCCTCTCTGAGGAGCCCATCTTCCTGGAACTAATTCAAGCCATCAACCTTGGCCTAGCTTTTGCCAGCACTATATGGCGCCGG
Seq C2 exon
CTGTATGACATGTTTCCCTGGGCCCTCCGCCACCTCTCAGGACCCCATCAGAAGATATTTCAGTACCACGAGGCTGTGAGGGGCTTCATTCGCCACGAAATCATCAGGCACAAACTCAGAACAGCTGAGGCCCCCAAGGATTTCATCAACTGCTACCTGTCACAAATCACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022818-'4-7,'4-5,5-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.0=100)
A:
PF0006717=p450=FE(11.6=100)
C2:
PF0006717=p450=PU(20.1=98.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGCCTGACCACTCTTCGA
R:
GATGAAATCCTTGGGGGCCTC
Band lengths:
253-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types