Special

MmuEX0013321 @ mm9

Exon Skipping

Gene
ENSMUSG00000022818 | Cyp2ab1
Description
cytochrome P450, family 2, subfamily ab, polypeptide 1 [Source:MGI Symbol;Acc:MGI:3644957]
Coordinates
chr16:20313801-20315177:-
Coord C1 exon
chr16:20315028-20315177
Coord A exon
chr16:20314271-20314431
Coord C2 exon
chr16:20313801-20313974
Length
161 bp
Sequences
Splice sites
3' ss Seq
GCCCTCCCCTCTCCTCACAGGGA
3' ss Score
12.44
5' ss Seq
CGGGTAATT
5' ss Score
6.79
Exon sequences
Seq C1 exon
GTGTTATCTGCAGCAATGGGCTTACATGGCGACAACAGAGACGATTCTGCCTGACCACTCTTCGAGAGCTGGGCCTTGGCAAGCAGGCGTTAGAGGTGCAGCTGCAGCACGAGGCAGCAGAGCTGGCTAAGGTGTTTCTCCAGGAAGAGG
Seq A exon
GGAGAGCCTTCGATCCTCAGATCCCTATCATCCGATCCACAACGAGAGTTATTGGGACCCTGGTGTTTGGCCATCATTTCCTCTCTGAGGAGCCCATCTTCCTGGAACTAATTCAAGCCATCAACCTTGGCCTAGCTTTTGCCAGCACTATATGGCGCCGG
Seq C2 exon
CTGTATGACATGTTTCCCTGGGCCCTCCGCCACCTCTCAGGACCCCATCAGAAGATATTTCAGTACCACGAGGCTGTGAGGGGCTTCATTCGCCACGAAATCATCAGGCACAAACTCAGAACAGCTGAGGCCCCCAAGGATTTCATCAACTGCTACCTGTCACAAATCACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022818-'1-2,'1-1,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact





	

	
5' UTR





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=NA A=NA C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NA

							
A:
NA

							
C2:
PF0006717=p450=PU(20.1=98.2)

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
NA
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chr3:183624423-183624583 
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr1:83840791-83840935 
Chicken
(galGal4)
chr9:15160152-15160312 
GgaEX6046401
([1])
Chicken
(galGal3)
chr9:16790251-16790397 
GgaEX6046401
(E1C788_CHICK)
Zebrafish
(danRer10)
chr20:25712641-25712801 
HIGH PSI
DreEX6045093
(cyp2j20)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
TTCTGCCTGACCACTCTTCGA

				
R: 
GATGAAATCCTTGGGGGCCTC

				
Band lengths: 
253-414

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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