RnoEX0025872 @ rn6
Exon Skipping
Gene
ENSRNOG00000021405 | Cyp2c7
Description
cytochrome P450, family 2, subfamily c, polypeptide 7 [Source:RGD Symbol;Acc:620379]
Coordinates
chr1:148099763-148101791:-
Coord C1 exon
chr1:148101621-148101791
Coord A exon
chr1:148100405-148100570
Coord C2 exon
chr1:148099763-148099923
Length
166 bp
Sequences
Splice sites
3' ss Seq
TCATATCAACAAATCCACAGAGA
3' ss Score
3.48
5' ss Seq
CAGGTATAC
5' ss Score
7.48
Exon sequences
Seq C1 exon
TCTTCAGACTTAAATTAAGGATCACCTGGAAAATAAAGACTACTGATCATTTGATCAAAAAAATTCTCTATAGAAAGGACATCAGAAGAAACTTCCCTGAGAGATGGCTTATCACCTAGGAGAGTATGTTTCTCCAGAGGAGCAGCAATGGGTTCCCAGCAACTATATAAG
Seq A exon
AGAACTGGCTGTTCTTGGAGTTGCACCATCTTCTTGTATAGCAAGGAGCAGTTCTCATCATGGTTTTTCCTCTCATACGGAAACCACCTGTAGTGTGGTCCTCTCCTCCTTTTTTGGATCAATAGTTGCTTTTTTGATTTATTGATTGTGGATACACAACTTCCAG
Seq C2 exon
GCTCACCCTGTGACCCCTCCTTGATCCTGAACTGTGCTCCATGCAATGTCATCTGCTCCATTACTTTCCAGAATCATTTTGATTATAAAGATAAGGAAATGCTTACGTTCATGGAAAAAGTGAATGAGAATCTCAAGATTATGAGCTCCCCATGGATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021405-'10-14,'10-13,11-14
Average complexity
C1
Mappability confidence:
75%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.364 A=0.000 C2=0.061
Domain overlap (PFAM):
C1:
PF0006717=p450=PD(10.8=48.5)
A:
PF0006717=p450=PD(7.0=71.4)
C2:
PF0006717=p450=FE(11.6=100)
Main Inclusion Isoform:
ENSRNOT00000040325fB3811
Main Skipping Isoform:
ENSRNOT00000040325fB3813
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAAACTTCCCTGAGAGATGGC
R:
TCCATGGGGAGCTCATAATCT
Band lengths:
242-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]