RnoEX0025875 @ rn6
Exon Skipping
Gene
ENSRNOG00000021405 | Cyp2c7
Description
cytochrome P450, family 2, subfamily c, polypeptide 7 [Source:RGD Symbol;Acc:620379]
Coordinates
chr1:148100405-148107588:-
Coord C1 exon
chr1:148107439-148107588
Coord A exon
chr1:148101621-148101718
Coord C2 exon
chr1:148100405-148100623
Length
98 bp
Sequences
Splice sites
3' ss Seq
ATCAAAAAAATTCTCTATAGAAA
3' ss Score
3.75
5' ss Seq
AAGGTAGCT
5' ss Score
6.77
Exon sequences
Seq C1 exon
GCATTGTTTTTAGCAATGGAAACAGATGGAAAGAGATGAGACGATTCACAATCATGACCTTTCGGAATTTGGGAATTGGAAAAAGGAACATTGAGGACCGTGTTCAAGAGGAAGCACAGTGCCTAGTGGAAGAACTGAGGAAAACAAAAG
Seq A exon
AAAGGACATCAGAAGAAACTTCCCTGAGAGATGGCTTATCACCTAGGAGAGTATGTTTCTCCAGAGGAGCAGCAATGGGTTCCCAGCAACTATATAAG
Seq C2 exon
AATATGTACGGTAAAATTTTATATTTAATTTAGTCATATCAACAAATCCACAGAGAACTGGCTGTTCTTGGAGTTGCACCATCTTCTTGTATAGCAAGGAGCAGTTCTCATCATGGTTTTTCCTCTCATACGGAAACCACCTGTAGTGTGGTCCTCTCCTCCTTTTTTGGATCAATAGTTGCTTTTTTGATTTATTGATTGTGGATACACAACTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021405-'9-12,'9-11,10-12
Average complexity
C3
Mappability confidence:
88%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=0.364 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.9=100)
A:
PF0006717=p450=PD(10.8=48.5)
C2:
PF0006717=p450=PD(7.0=71.4)
Main Inclusion Isoform:
ENSRNOT00000040325fB3813
Main Skipping Isoform:
ENSRNOT00000040325fB3811
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCACAGTGCCTAGTGGAAGA
R:
AGGTGGTTTCCGTATGAGAGGA
Band lengths:
180-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]