RnoEX0025920 @ rn6
Exon Skipping
Gene
ENSRNOG00000042224 | Cyp2j10
Description
cytochrome P450, family 2, subfamily j, polypeptide 10 [Source:RGD Symbol;Acc:1563215]
Coordinates
chr5:115024415-115036340:-
Coord C1 exon
chr5:115036180-115036340
Coord A exon
chr5:115031506-115031682
Coord C2 exon
chr5:115024415-115024553
Length
177 bp
Sequences
Splice sites
3' ss Seq
GCCTTCCTCTCCCCAATTAGCTC
3' ss Score
7.57
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GACAGCCTTTTGATCCTCACTTCAAGATCAACAATGCAGTTTCCAATATCATTTGCTCCATCACCTTTGGTGAAAGGTTTGAGTACCATGACAGTCAGTTTCAGGAGCTGCTGAAGTTACTGGATAAGGCCATGTACCTGGGTACTCCCATGATGATCCAC
Seq A exon
CTCTACAACATGTTCCCATGGATAATCAAACATCTCCCAGGACAACACCAAACCTTGTTGGCTACCTGGGGAAAACTGAAATCATATATTGCTGATATCATTGAAAATCACCGCGAAGACTGGAACCCTGCTGAGCCGAGAGACTTCATTGATGCTTTTCTCAATGAAATGGCAAAG
Seq C2 exon
GGATCTGTGGTTATGACCAACTTGACTGCATTGCATATGGACCCAAAAGAGTGGGCCACCCCAGATGTGTTCAACCCAGAGCACTTTTTGGAGAATGGACAGTTTAAGAAGAGAGACTCTTTCCTGCCATTCTCAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000042224_MULTIEX1-15/18=14-18
Average complexity
C3
Mappability confidence:
84%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCCTTTTGATCCTCACTTCA
R:
AAGTGCTCTGGGTTGAACACA
Band lengths:
246-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]