Special

MmuEX0013351 @ mm10

Exon Skipping

Gene
ENSMUSG00000028571 | Cyp2j13
Description
cytochrome P450, family 2, subfamily j, polypeptide 13 [Source:MGI Symbol;Acc:MGI:2385197]
Coordinates
chr4:96058984-96068347:-
Coord C1 exon
chr4:96068184-96068347
Coord A exon
chr4:96061899-96062075
Coord C2 exon
chr4:96058984-96059125
Length
177 bp
Sequences
Splice sites
3' ss Seq
GCCTTCTTCTCCCTAATTAGCTC
3' ss Score
7.57
5' ss Seq
AAGGTGGGA
5' ss Score
6.03
Exon sequences
Seq C1 exon
GACAGCCTTTTGATCCTCACTTCAAGATCTACAGTGCAGTTTCCAATATCATTTGCTCCATCACCTTTGGGGAACGGTTTGAGTACCATGACAGTCAGTTTCAGGAGCTGCTGCAGTTACTGGATAAAGCCATGTACTTGGGTACCACCTCCCTAATGGTCCAT
Seq A exon
CTCTACAACATCTTCCCATGGATAACAAAACATCTCCCAGGACAACACCAAACATTGTTGGCTACCTGGAGAAAACTGAAATCATATATTGCTGATATAATTGACAATCACCGCAAAGACTGGAACCCTGATGAGCCAAGAGACTTCATTGATGCTTTTCTCAATGAAATGGCAAAG
Seq C2 exon
TACCCAGGCAAGACTACTACAAGTTTCAATGAAGAAAACCTTATCTGCAGCACTCTGGACCTCTTCCTTGCTGGAACAGAGACAACATCCTCAACACTACGATGGGCTCTGCTCTACATGGCCCTATACCCAGAAGTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028571_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact





	

	
Alternative protein isoforms (No Ref)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=0.002 C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF0006717=p450=FE(28.7=100),PF0006717=p450=PU(8.6=20.0)

							
A:
PF0006717=p450=FE(12.7=100)

							
C2:
PF0006717=p450=PD(0.5=2.1),PF0006717=p450=FE(36.7=100)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000030305





     
                   









    
Main Skipping Isoform:
ENSMUSP00000102693





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000095587, ENSMUSP00000121962
          









    
Other Skipping Isoforms:
NA
  



Associated events






Other assemblies


mm9




Conservation


Human
(hg38)
chr1:59909784-59909960 
HIGH PSI
HsaEX6031246
(CYP2J2)
Human
(hg19)
chr1:60375456-60375632 
HIGH PSI
HsaEX6031246
(CYP2J2)
Rat
(rn6)
chr5:115031506-115031682 
HIGH PSI
RnoEX0025920
(Cyp2j10)
Cow
(bosTau6)
chr3:86619917-86620093 
ALTERNATIVE
BtaEX0000370
([1])
Chicken
(galGal4)
chr9:15159345-15159521 
GgaEX6046402
([2])
Chicken
(galGal3)
chr9:16789430-16789606 
GgaEX6046402
(E1C788_CHICK)
Zebrafish
(danRer10)
chr20:25679285-25679461 
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
CACCTTTGGGGAACGGTTTGA

				
R: 
GGACTTCTGGGTATAGGGCCA

				
Band lengths: 
242-419

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types





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