MmuEX0013351 @ mm9
Exon Skipping
Gene
ENSMUSG00000028571 | Cyp2j13
Description
cytochrome P450, family 2, subfamily j, polypeptide 13 [Source:MGI Symbol;Acc:MGI:2385197]
Coordinates
chr4:95725675-95735038:-
Coord C1 exon
chr4:95734875-95735038
Coord A exon
chr4:95728590-95728766
Coord C2 exon
chr4:95725675-95725816
Length
177 bp
Sequences
Splice sites
3' ss Seq
GCCTTCTTCTCCCTAATTAGCTC
3' ss Score
7.57
5' ss Seq
AAGGTGGGA
5' ss Score
6.03
Exon sequences
Seq C1 exon
GACAGCCTTTTGATCCTCACTTCAAGATCTACAGTGCAGTTTCCAATATCATTTGCTCCATCACCTTTGGGGAACGGTTTGAGTACCATGACAGTCAGTTTCAGGAGCTGCTGCAGTTACTGGATAAAGCCATGTACTTGGGTACCACCTCCCTAATGGTCCAT
Seq A exon
CTCTACAACATCTTCCCATGGATAACAAAACATCTCCCAGGACAACACCAAACATTGTTGGCTACCTGGAGAAAACTGAAATCATATATTGCTGATATAATTGACAATCACCGCAAAGACTGGAACCCTGATGAGCCAAGAGACTTCATTGATGCTTTTCTCAATGAAATGGCAAAG
Seq C2 exon
TACCCAGGCAAGACTACTACAAGTTTCAATGAAGAAAACCTTATCTGCAGCACTCTGGACCTCTTCCTTGCTGGAACAGAGACAACATCCTCAACACTACGATGGGCTCTGCTCTACATGGCCCTATACCCAGAAGTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028571_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(28.7=100),PF0006717=p450=PU(8.6=20.0)
A:
PF0006717=p450=FE(12.7=100)
C2:
PF0006717=p450=PD(0.5=2.1),PF0006717=p450=FE(36.7=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCTTTGGGGAACGGTTTGA
R:
GGACTTCTGGGTATAGGGCCA
Band lengths:
242-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: