RnoEX0025931 @ rn6
Exon Skipping
Gene
ENSRNOG00000020743 | Cyp2s1
Description
cytochrome P450, family 2, subfamily s, polypeptide 1 [Source:RGD Symbol;Acc:1306078]
Coordinates
chr1:82601617-82603434:-
Coord C1 exon
chr1:82603274-82603434
Coord A exon
chr1:82603096-82603194
Coord C2 exon
chr1:82601617-82601758
Length
99 bp
Sequences
Splice sites
3' ss Seq
TTGTCTTCCTGTACCCACAGGCC
3' ss Score
11.37
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
GACGTCCATTCAACCCTTCCATGCTGCTGGCCCAGGCTACCTCTAATGTTGTCTGTTCCCTCATCTTTGGCATCCGTTTGCCCTATGAAGATAAAGAGTTTCAGGCTGTGATCCAGGCAGCAAGTGGGACCTTGTTGGGGATCAGCTCTCCATGGGGCCAG
Seq A exon
GCCTACGAGATGTTCTCCTGGCTACTGCAGCCCTTGCCAGGCCCCCACACACAGCTCCAGCACCACTTGGGCACCCTGGCTGCCTTCACTATCCAGCAG
Seq C2 exon
GAGAAAGAAGACCCAGGTACAGAATTCACCGAGAAGAACTTGCTGATGACAGTCACATACCTGCTGTTTGCTGGGACTATGACCATCGGAGCCACCATCCGCTATGCCCTTCTGCTCCTACTGAAGTACCCTCAAGTCCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020743-'4-5,'4-4,5-5
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.100 C2=0.125
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.5=100)
A:
PF0006717=p450=FE(12.8=100)
C2:
PF0006717=p450=FE(10.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGATCCAGGCAGCAAGTG
R:
TTCAGTAGGAGCAGAAGGGCA
Band lengths:
181-280
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]