BtaEX6082520 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018240 | CYP2S1
Description
Bos taurus cytochrome P450, family 2, subfamily S, polypeptide 1 (CYP2S1), mRNA. [Source:RefSeq mRNA;Acc:NM_001100366]
Coordinates
chr18:50658440-50661379:+
Coord C1 exon
chr18:50658440-50658600
Coord A exon
chr18:50658743-50658922
Coord C2 exon
chr18:50661238-50661379
Length
180 bp
Sequences
Splice sites
3' ss Seq
AGCTGTTGTTCTCCCCACAGACC
3' ss Score
11.08
5' ss Seq
AAGGTGGGG
5' ss Score
5.87
Exon sequences
Seq C1 exon
GACGGCCGTTTGACCCCTCCCTGCTGCTGGCCCAGGCCACCTGCAACATCATCTGCTCCCTAGTCTTCGACCTCCGCCTCCCCTACGACAATGAGGAGTTCCAGGCTGTGGTCCGGGCGGCTGGCGGCATCGCCGTGGGGGTCAGCTCCCCGTGGGGCCAG
Seq A exon
ACCTACGAGATGTTCTCCCGGTTCCTACAGCGCCTCCCGGGCCCCCACACGCAGCTCCTCCGCCACTTGGGCACCGTGGCCGCCTTCGCCGCCCAGCAGGTGTGGCAGCACAAGGGGAGCCTGGGCACCTCAGGCCCTGTGCGCGATCTCGTGGACGCCTTCCTGCTGAAGATGGCAAAG
Seq C2 exon
GAGAAGCAAGACCCAAACACAGAATTCACCGCCAAGAACCTGCTGATGACGGTCGTGTATCTGCTGTTTGCCGGGACAGTGACGGTCAGCACCACGATCCGCTACACCCTGCTGCTCCTGCTGAAATACCCTCAGGTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018240-'3-5,'3-4,4-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.1=100)
A:
PF0006717=p450=FE(13.5=100)
C2:
PF0006717=p450=FE(10.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACCTGCAACATCATCTGCT
R:
GGTATTTCAGCAGGAGCAGCA
Band lengths:
255-435
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]