MmuEX0013360 @ mm10
Exon Skipping
Gene
ENSMUSG00000040703 | Cyp2s1
Description
cytochrome P450, family 2, subfamily s, polypeptide 1 [Source:MGI Symbol;Acc:MGI:1921384]
Coordinates
chr7:25808044-25809598:-
Coord C1 exon
chr7:25809438-25809598
Coord A exon
chr7:25809179-25809358
Coord C2 exon
chr7:25808044-25808185
Length
180 bp
Sequences
Splice sites
3' ss Seq
CTGTCTTCCTGTGCCCACAGGCC
3' ss Score
12.69
5' ss Seq
CAGGTGTGG
5' ss Score
6.34
Exon sequences
Seq C1 exon
GACGTCCATTCAACCCTTCCATGCTGCTGGCCCAGGCCACCTCTAATGTCGTCTGTTCCCTTGTCTTTGGCATCCGTTTGCCCTATGACGATAAAGAGTTCCAGGCTGTGATCCAGGCAGCAAGTGGTACCTTGTTAGGGATCAGCTCTCCATGGGGCCAG
Seq A exon
GCCTACGAGATGTTCTCCTGGCTACTGCAGCCCCTGCCAGGCCCCCACACACAGCTCCAGCACCACTTGGGCACCCTGGCTGCCTTCACTATCCAGCAGGTACAGAAACACCAGGGACGCTTCCAAACCTCAGGTCCTGCACGTGATGTCGTTGACGCCTTCCTGCTAAAGATGGCACAG
Seq C2 exon
GAGAAACAAGACCCAGGTACAGAATTCACCGAGAAGAACTTGCTGATGACGGTCACATACCTGCTGTTTGCTGGGACCATGACCATCGGTGCCACCATCCGCTATGCCCTCCTGCTCCTGCTGAGATACCCTCAAGTCCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040703-'9-9,'9-6,12-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.016 C2=0.021
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.5=100)
A:
PF0006717=p450=FE(12.8=100)
C2:
PF0006717=p450=FE(10.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCCACCTCTAATGTCGTCT
R:
GGTATCTCAGCAGGAGCAGGA
Band lengths:
258-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types