RnoEX0025936 @ rn6
Exon Skipping
Gene
ENSRNOG00000011053 | Cyp2u1
Description
cytochrome P450, family 2, subfamily u, polypeptide 1 [Source:RGD Symbol;Acc:1309433]
Coordinates
chr2:236414135-236418920:-
Coord C1 exon
chr2:236418753-236418920
Coord A exon
chr2:236416283-236416587
Coord C2 exon
chr2:236414135-236414468
Length
305 bp
Sequences
Splice sites
3' ss Seq
CTTCTCTGATCTCACTTTAGGGA
3' ss Score
10.03
5' ss Seq
AGGGTAAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
TCCTCCAAGGGTACAGTATTCCTAAAGGCACAGTGGTCCTACCCAATTTGTGGTCCATACACAGAGACCCAGTCATTTGGGAGAAGCCAGACGACTTCTGTCCTCATCGATTTCTGGATGACCAGGGACAACTTTTGAAAAGAGAAACGTTTATCCCTTTTGGGATAG
Seq A exon
GGAAGCGGGTGTGTATGGGAGAGCAGCTGGCCAAGATGGAGCTATTCCTGATGTTTGTGAGCCTGATGCAGAGTTTCACCTTTGCTTTACCTGAGGGCTCCGAGAAGCCCATCATGACCGGCAGATTTGGTCTAACATTGGCCCCACATCCCTTTAATGTAACCGTCTCAAAGAGATGAAGAAACCGCGAGGAGTAAGGAGGGAGCCGGCTCCACGTACCCGTCCCACACAGTCTTCCTGTTGCTCTTGAACATGGGCCAAGCAGTTCCGCAGCCGGGAGAGGCTCCAGACGAGAGACCCAGAGG
Seq C2 exon
GCCCCCCTACTCTCTGACTCGCACATGGATCTCTGGACCTACTAACCAAAGATTTCACATCATACTTGAAGAAGCCTCTGCCTTCTCTGAGACGACATCAGAATCCCACGATTATCCGGCAGTGTAACACCGTGCCTCAAGCTGGTGAAAACCCCTTTCCACACGCTGCCACAGAGGGACTGCACGTCTTCCCAGCCGACTGCTATTTGAAGACTTTGCACTTCCTGTCCCATCTGAAATGTGAAATTAACTGTGGTCAGTTTTCTAATAACGAGGTCTGGACTTCGTCTGTACTGGAGCTCTTGGTGCTCCTATTAAACCTCTTATTTTACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011053-'10-7,'10-6,11-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.2=100)
A:
PF0006717=p450=PD(12.0=91.7)
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTCCATACACAGAGACCCA
R:
TGGGACAGGAAGTGCAAAGTC
Band lengths:
350-655
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]