HsaEX1010873 @ hg38
Exon Skipping
Gene
ENSG00000155016 | CYP2U1
Description
cytochrome P450 family 2 subfamily U member 1 [Source:HGNC Symbol;Acc:HGNC:20582]
Coordinates
chr4:107910394-107978894:+
Coord C1 exon
chr4:107910394-107910549
Coord A exon
chr4:107950245-107950626
Coord C2 exon
chr4:107978720-107978894
Length
382 bp
Sequences
Splice sites
3' ss Seq
TTTTCTGATCTCATTTTTAGGGA
3' ss Score
11.52
5' ss Seq
CAGGTCTGT
5' ss Score
6.84
Exon sequences
Seq C1 exon
GTGGTTCCCCATCTTTTATTTTTTTGAGAAAAATGTACAAGGCTCAATTCCTTGCTGCTTCTCCTGGCCGCTGTCTTGGCCTCCTGGCTGCTTCAAATCATCATGCAAAAAGTATTCACGGGTTCAGAAGATTGGTGAAGACAATGAGAAATCGAC
Seq A exon
GGAAGCGGGTGTGTATGGGAGAACAACTGGCAAAGATGGAATTATTCCTAATGTTTGTGAGCCTAATGCAGAGTTTCGCATTTGCTTTACCTGAGGATTCTAAGAAGCCCCTCCTGACTGGAAGATTTGGTCTAACTTTAGCCCCACATCCATTTAATATAACTATTTCAAGGAGATGAAGAGCATCTCCAAGAAGAGATGGTAAAAAGATATATAAATACATATCCTTCTAAGCAGATTCTTCCTACTGCAAAGGACAGTGAATCCAGCAACTCAGTGGATCCAAGCTGGGCTCAGAGGTCGGAAGGAGGGTAGAGCACACTGGGAGGTTTCATCTTGGAGGATTCCTCAGCAGGATACTTCAGCCATTTTAGTAATGCAG
Seq C2 exon
TCTGTTCTCTGTGCCAGCCCTTTCCTTTGCCAAAGCACTTGCTGTCTCTGAGTTGGTTTGGTGACCAGGGTCATATTTCCCAATACTTCACTCTTTCCACACAGAGAAATGAAGCACAACTCCAATAATAGGGTGAGGGTGCAAGTCAGGGACCACAGAAGTCACTACTGGGCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000155016_MULTIEX1-7/7=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=NA
Domain overlap (PFAM):
C1:
NA
A:
PF0006717=p450=PD(12.5=91.7)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTGAGAAAAATGTACAAGGCTCA
R:
GAGCCCAGTAGTGACTTCTGTG
Band lengths:
310-692
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains