HsaINT1032713 @ hg38
Intron Retention
Gene
ENSG00000249604 | RP11-286E11.2
Description
NA
Coordinates
chr4:107936031-107936573:-
Coord C1 exon
chr4:107936487-107936573
Coord A exon
chr4:107936181-107936486
Coord C2 exon
chr4:107936031-107936180
Length
306 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
3' ss Seq
TCTTTTCTTTTTGTGCTTAGGAA
3' ss Score
10.39
Exon sequences
Seq C1 exon
TTCTGAAGGCTGGGAAGTCCAAGAGGATAGCACTGGCATCTGGCAAGGGCCTTCATGCTGCATCATCCCATGGTGGAAGGCAGAAGG
Seq A exon
GTAAGAGAGGATGAAAGAGAGAGAGAGAGAAAGGGGGCCAAACTCATCCTTCTTCTCAGAAACCCACTCCCACAATAACTAACCCACTCTGGTGATAACAGCACTAATCCATTGATGAAGGCAGAGCCCTCATGACCTAGTCATCTTTTAAGTTCCCATCTCTTGACACTGTTGCATTAGGGATTAAGTTTCTAATACATAAACATTTGGGGACACCTTCAAACCATATCAGCACACTTAAGAGTGAAACGCTCCTTTGGTAGCCTTAGCTCTGATTTTGTAATTTTCTTTTCTTTTTGTGCTTAG
Seq C2 exon
GAAAAGAATCAATCAGAATGATGGACACAGCATCTTTATGGCCTATCTAGTTTACTGTAGTTTTTATGGGCTTAAGAAGAAGACCACCTTGTCTAATCATGAAATTTTGAAAAATTTAAACATAAAAAATAAAATTCCTACATTCTGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000249604:ENST00000512428:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGAAGGCTGGGAAGTCCA
R:
TTCATGATTAGACAAGGTGGTCTTCT
Band lengths:
190-496
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains