HsaEX6085738 @ hg38
Exon Skipping
Gene
ENSG00000155016 | CYP2U1
Description
cytochrome P450 family 2 subfamily U member 1 [Source:HGNC Symbol;Acc:HGNC:20582]
Coordinates
chr4:107910394-107978894:+
Coord C1 exon
chr4:107910394-107910549
Coord A exon
chr4:107949350-107949517
Coord C2 exon
chr4:107978720-107978894
Length
168 bp
Sequences
Splice sites
3' ss Seq
TATGTTTCCTTTTGTTTTAGTGC
3' ss Score
10.32
5' ss Seq
TAGGTCAGT
5' ss Score
6.39
Exon sequences
Seq C1 exon
GTGGTTCCCCATCTTTTATTTTTTTGAGAAAAATGTACAAGGCTCAATTCCTTGCTGCTTCTCCTGGCCGCTGTCTTGGCCTCCTGGCTGCTTCAAATCATCATGCAAAAAGTATTCACGGGTTCAGAAGATTGGTGAAGACAATGAGAAATCGAC
Seq A exon
TGCTCCAAGGGTATACCATTCCTAAAGGCACATTGATCTTACCCAACCTGTGGTCAGTACATAGAGACCCAGCCATTTGGGAGAAACCGGAGGATTTCTACCCTAATCGATTTCTGGATGACCAAGGACAACTAATTAAAAAAGAAACCTTTATTCCTTTTGGGATAG
Seq C2 exon
TCTGTTCTCTGTGCCAGCCCTTTCCTTTGCCAAAGCACTTGCTGTCTCTGAGTTGGTTTGGTGACCAGGGTCATATTTCCCAATACTTCACTCTTTCCACACAGAGAAATGAAGCACAACTCCAATAATAGGGTGAGGGTGCAAGTCAGGGACCACAGAAGTCACTACTGGGCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000155016_MULTIEX1-6/7=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=NA
Domain overlap (PFAM):
C1:
NA
A:
PF0006717=p450=FE(12.7=100)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCCTTGCTGCTTCTCCTGG
R:
TGACTTGCACCCTCACCCTAT
Band lengths:
258-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains