RnoEX0025938 @ rn6
Exon Skipping
Gene
ENSRNOG00000011053 | Cyp2u1
Description
cytochrome P450, family 2, subfamily u, polypeptide 1 [Source:RGD Symbol;Acc:1309433]
Coordinates
chr2:236416283-236420765:-
Coord C1 exon
chr2:236420604-236420765
Coord A exon
chr2:236418753-236418920
Coord C2 exon
chr2:236416283-236416587
Length
168 bp
Sequences
Splice sites
3' ss Seq
TTCTTGTCTGTTGTCCACAGTCC
3' ss Score
10.31
5' ss Seq
TAGGTCAGT
5' ss Score
6.39
Exon sequences
Seq C1 exon
AAAAGGTTCATGAAGAAATTGAAAGGGTCATTGGCCGTGACCGTGCACCTTCCCTCACAGACAAGGCCCAGATGCCATACACAGAAGCCACCATCATGGAGGTACAGCGGTTATCCATGGTGGTACCACTTGCCATTCCTCACATGACCTCGGAGAAAACAG
Seq A exon
TCCTCCAAGGGTACAGTATTCCTAAAGGCACAGTGGTCCTACCCAATTTGTGGTCCATACACAGAGACCCAGTCATTTGGGAGAAGCCAGACGACTTCTGTCCTCATCGATTTCTGGATGACCAGGGACAACTTTTGAAAAGAGAAACGTTTATCCCTTTTGGGATAG
Seq C2 exon
GGAAGCGGGTGTGTATGGGAGAGCAGCTGGCCAAGATGGAGCTATTCCTGATGTTTGTGAGCCTGATGCAGAGTTTCACCTTTGCTTTACCTGAGGGCTCCGAGAAGCCCATCATGACCGGCAGATTTGGTCTAACATTGGCCCCACATCCCTTTAATGTAACCGTCTCAAAGAGATGAAGAAACCGCGAGGAGTAAGGAGGGAGCCGGCTCCACGTACCCGTCCCACACAGTCTTCCTGTTGCTCTTGAACATGGGCCAAGCAGTTCCGCAGCCGGGAGAGGCTCCAGACGAGAGACCCAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011053_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.8=100)
A:
PF0006717=p450=FE(12.2=100)
C2:
PF0006717=p450=PD(12.0=91.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGTTATCCATGGTGGTACC
R:
TCCTTACTCCTCGCGGTTTCT
Band lengths:
256-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]