MmuEX6074125 @ mm10
Exon Skipping
Gene
ENSMUSG00000027983 | Cyp2u1
Description
cytochrome P450, family 2, subfamily u, polypeptide 1 [Source:MGI Symbol;Acc:MGI:1918769]
Coordinates
chr3:131288441-131295549:-
Coord C1 exon
chr3:131295388-131295549
Coord A exon
chr3:131293517-131293684
Coord C2 exon
chr3:131288441-131291307
Length
168 bp
Sequences
Splice sites
3' ss Seq
TTCTTGTCTGTTGTCTGCAGTCC
3' ss Score
8.8
5' ss Seq
TAGGTCAGT
5' ss Score
6.39
Exon sequences
Seq C1 exon
AAAAGGTTCATGAAGAAATTGAAAGGGTCATTGGCTGTGACCGTGCACCTTCCCTCACGGACAAGGCCCAGATGCCATACACAGAGGCCACCATCATGGAGGTGCAGCGGCTGTCCATGGTGGTGCCGCTCGCCATTCCTCACATGACCTCGGAGAAAACAG
Seq A exon
TCCTCCAAGGGTTCACCATTCCCAAAGGCACAGTGGTCCTAATCAACCTGTGGTCAGTACACAGAGACCCAGCCATCTGGGAGAAGCCAGACGACTTCTGTCCTCATCGATTTCTGGATGACCAAGGACAACTTTTGAAAAGAGAAACTTTTATTCCTTTTGGGATAG
Seq C2 exon
GGAAGCGGGTGTGTATGGGAGAGCAGCTGGCCAAGATGGAGTTATTCCTGATGTTCGTGAGCCTGATGCAGACTTTCACCTTTGCGTTACCTGAGGGTTCCGAGAAGCCTGTCATGACTGGGAGATTTGGTCTAACACTGGCCCCGCACCCTTTTAATGTAACCATCTCAAAGAGATGAAGAAGCCCCGAGAAGAGAGGCGCGGGCAGACTCCATGTACTGGTCGGTCCTAGACAGCCTTCCTATTGCTGCTGAGCATGGGCCTCGCAGTTCGGCACAGCCAGGAGAGGCTGAGTGGTGCCCACTGGCCACGGGGAAGCATGGACACTCGGTTTAGTTGTGTGGATTCCATCAGAAAGCAGTGCTTCTCATCTCTCAGCCTCCGTCATCCCATGGTAAAATGAGGTAATGAAACGTCTCTCAACTCTGAGAGGAACTGGATGCTTCATGAAGTCTGTGCTGGTGGCAGATGCTGGGCAAATCAGTAGATCTGCCTTCGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027983-'4-8,'4-7,7-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.006 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.8=100)
A:
PF0006717=p450=FE(12.2=100)
C2:
PF0006717=p450=PD(12.0=91.7)
Main Skipping Isoform:
ENSMUST00000106337fB8448
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGCCATACACAGAGGCCAC
R:
TACATTAAAAGGGTGCGGGGC
Band lengths:
253-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types