GgaEX0015706 @ galGal3
Exon Skipping
Gene
ENSGALG00000010532 | F1NLH1_CHICK
Description
NA
Coordinates
chr4:39316968-39319536:-
Coord C1 exon
chr4:39319045-39319536
Coord A exon
chr4:39317851-39318018
Coord C2 exon
chr4:39316968-39317457
Length
168 bp
Sequences
Splice sites
3' ss Seq
GTGCTTTGTCTTTTTTAAAGTGC
3' ss Score
6.24
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
GTATAGTTAAACTGTTAACTAAGGTTACAACTACATTTGGAACTGAAACAGAACTTTTCCTGTACTTTGCCAACATAGTAGCGCGCTGTCAGTGATTGTCCTCTCTTTAGCTTTACTCTGGACCCTTGTCAAGATTGTACTTGATTGGTTTATTCGCTACTGAGACTGTTCTGTTGGCTTGTGCTGCCACAGTTATTTTGGCTAGAAGATCATGTATTGTAATTTTTGACACATTTATGTAAACACTGAAGCACAGATAAGTGAAACTGAGATTATGCCTTCTCATACATTGTACTTCTTTTTTTTTTTTTCATCACTGTCTTTGAATAGAGAAAGTTCATGCAGAAATTGAAGCAGTTCTAGGACGTGACAAAGTTCCCTCTCTTGCCCACAAGGCTCAAATGCCCTTCACGGAGGCAACCATTATGGAAGTGCAGAGGATGACTGCAGTTGTTCCCCTTTCTATCCCACGAATGGCTTCAGAAACTGCTG
Seq A exon
TGCTGCAGGGATATACTATTCCAAAGGGCAGTGTGATTGTGCCCAACTTGTGGTCGGTACACAGAGATCCTAATATTTGGGAGAACCCAGATGACTTCCAACCAACAAGATTTCTGGATGAAAATGGCCAGATAATTAAGAAAGAGGCATTCATTCCTTTTGGAATGG
Seq C2 exon
GTAAACGTGTGTGCATGGGAGAGCAGTTGGCAAAAATGGAGCTGTTCTTAATTTTTACAAGTCTAATGCAAAGCTTTACCTTTTTGTACCCTGAAAATGCTACAAAACCATCTATGGAGGGAAGGTTTGGTCTAACTTTAGCTCCCTGTCCATTCAAAATAATAGCTTTGGAGAGATGATACAACATCACAAATAGATGAAAAAGAAAGAAATGCTGCACTTTTAAAATCCAGCTTTATTTTCTTTCCAGTTTATTTTGTCACTTTCTTTCCAGAAAAACAGTAACTGCATAGGCTTTCATACCAATGAGGAAGATCCATTTGCAATTCTGGACAGAGAACTATTTATTTATTTTTTTGTCAGCTGTTGCATTCCACAAATGAACTGACAATATAGTTTGCAATCCGATATTAAAACTTGCTGGGCTTAACTCCTCTGTCTGTTAAGCTAAATACTGTTTGCTTGTCAAGTGTTAATTATGGGAGAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010532-'0-3,'0-2,1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(32.5=98.2)
A:
PF0006717=p450=FE(33.7=100)
C2:
PF0006717=p450=PD(33.1=91.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTCCCTCTCTTGCCCACAA
R:
AGTTAGACCAAACCTTCCCTCCA
Band lengths:
256-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]