HsaEX6085738 @ hg19
Exon Skipping
Gene
ENSG00000155016 | CYP2U1
Description
cytochrome P450, family 2, subfamily U, polypeptide 1 [Source:HGNC Symbol;Acc:20582]
Coordinates
chr4:108868532-108874613:+
Coord C1 exon
chr4:108868532-108868693
Coord A exon
chr4:108870506-108870673
Coord C2 exon
chr4:108871401-108874613
Length
168 bp
Sequences
Splice sites
3' ss Seq
TATGTTTCCTTTTGTTTTAGTGC
3' ss Score
10.32
5' ss Seq
TAGGTCAGT
5' ss Score
6.39
Exon sequences
Seq C1 exon
AAAAGGTTCATGAAGAAATTGAAAGAGTCATTGGCGCCAACCGAGCTCCTTCCCTCACAGACAAGGCCCAGATGCCCTACACAGAAGCCACCATCATGGAAGTGCAGAGGCTAACTGTGGTGGTGCCGCTTGCCATTCCTCATATGACCTCAGAGAACACAG
Seq A exon
TGCTCCAAGGGTATACCATTCCTAAAGGCACATTGATCTTACCCAACCTGTGGTCAGTACATAGAGACCCAGCCATTTGGGAGAAACCGGAGGATTTCTACCCTAATCGATTTCTGGATGACCAAGGACAACTAATTAAAAAAGAAACCTTTATTCCTTTTGGGATAG
Seq C2 exon
GGAAGCGGGTGTGTATGGGAGAACAACTGGCAAAGATGGAATTATTCCTAATGTTTGTGAGCCTAATGCAGAGTTTCGCATTTGCTTTACCTGAGGATTCTAAGAAGCCCCTCCTGACTGGAAGATTTGGTCTAACTTTAGCCCCACATCCATTTAATATAACTATTTCAAGGAGATGAAGAGCATCTCCAAGAAGAGATGGTAAAAAGATATATAAATACATATCCTTCTAAGCAGATTCTTCCTACTGCAAAGGACAGTGAATCCAGCAACTCAGTGGATCCAAGCTGGGCTCAGAGGTCGGAAGGAGGGTAGAGCACACTGGGAGGTTTCATCTTGGAGGATTCCTCAGCAGGATACTTCAGCCATTTTAGTAATGCAGGTCTGTGATTTGGGGGATAGAAAACAAAGTACCTATGAAACGGGATATCTGGATTTTACTTGCAGTGGCTTCCACCGATGGGCCAATCTTCTCATTTCTTAGTGCCTCAGACATCCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000155016-'7-8,'7-7,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.2=100)
A:
PF0006717=p450=FE(12.7=100)
C2:
PF0006717=p450=PD(12.5=91.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGCTCCTTCCCTCACAGA
R:
CCAGTCAGGAGGGGCTTCTTA
Band lengths:
242-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)