DreEX6033253 @ danRer10
Exon Skipping
Gene
ENSDARG00000026548 | cyp2u1
Description
cytochrome P450, family 2, subfamily U, polypeptide 1 [Source:ZFIN;Acc:ZDB-GENE-070730-1]
Coordinates
chr1:49279576-49283193:-
Coord C1 exon
chr1:49283032-49283193
Coord A exon
chr1:49282247-49282414
Coord C2 exon
chr1:49279576-49279768
Length
168 bp
Sequences
Splice sites
3' ss Seq
TAATCTGTGTCTCTTTGCAGAGT
3' ss Score
10.81
5' ss Seq
TGGGTATGT
5' ss Score
7.43
Exon sequences
Seq C1 exon
AGAAGGTTCAGAAGGAGATTGATGCAGTGGTGGGATCTGAGAGAGTGCCCTCTCTGACCGATAAGAGCAGTTTGCCGTACACTGAAGCCACTATTATGGAGGTGATAAGAATGACTGTTGTGGTTCCTCTGTCCATACCACATATGGCCTCAGAAACCACCG
Seq A exon
AGTTCAGAGGGTTCACCATCCCTAAAGGAACGGTTATCATCCCAAACCTCTGGTCAGTTCACAGGGATCCCACAGTGTGGGAAAATCCTGATGACTTCAATCCATCACGATTTCTAGATGACCAGGGAAAGATTCTCAGGAAAGACTGCTTTATTCCATTTGGATTGG
Seq C2 exon
GGCGCAGAGTGTGCATGGGAGAGCAGCTGGCGAAGATGGAGCTGTTTCTGATGTTCACCAGCCTGATGCAGACCTTCACATTCAGGTTTCCAGAGGGAGCAACTGCTCCTTCCATGCACGGACGCTTCGGCCTGACTCTGGCTCCATGCCCGTTCACTGTCTGTGTCAAAACACGCTGAACGGGGCTTTAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000026548-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.009 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.1=100)
A:
PF0006717=p450=FE(12.5=100)
C2:
PF0006717=p450=PD(12.3=91.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGATTGATGCAGTGGTGGG
R:
TGCTCCCTCTGGAAACCTGAA
Band lengths:
250-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]