GgaEX0015706 @ galGal4
Exon Skipping
Gene
ENSGALG00000027908 | CYP2U1
Description
cytochrome P450, family 2, subfamily U, polypeptide 1 [Source:HGNC Symbol;Acc:HGNC:20582]
Coordinates
chr4:37409174-37412404:-
Coord C1 exon
chr4:37412243-37412404
Coord A exon
chr4:37411049-37411216
Coord C2 exon
chr4:37409174-37410655
Length
168 bp
Sequences
Splice sites
3' ss Seq
GTGCTTTGTCTTTTTTAAAGTGC
3' ss Score
6.24
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
AGAAAGTTCATGCAGAAATTGAAGCAGTTCTAGGACGTGACAAAGTTCCCTCTCTTGCCCACAAGGCTCAAATGCCCTTCACGGAGGCAACCATTATGGAAGTGCAGAGGATGACTGCAGTTGTTCCCCTTTCTATCCCACGAATGGCTTCAGAAACTGCTG
Seq A exon
TGCTGCAGGGATATACTATTCCAAAGGGCAGTGTGATTGTGCCCAACTTGTGGTCGGTACACAGAGATCCTAATATTTGGGAGAACCCAGATGACTTCCAACCAACAAGATTTCTGGATGAAAATGGCCAGATAATTAAGAAAGAGGCATTCATTCCTTTTGGAATGG
Seq C2 exon
GTAAACGTGTGTGCATGGGAGAGCAGTTGGCAAAAATGGAGCTGTTCTTAATTTTTACAAGTCTAATGCAAAGCTTTACCTTTTTGTACCCTGAAAATGCTACAAAACCATCTATGGAGGGAAGGTTTGGTCTAACTTTAGCTCCCTGTCCATTCAAAATAATAGCTTTGGAGAGATGATACAACATCACAAATAGATGAAAAAGAAAGAAATGCTGCACTTTTAAAATCCAGCTTTATTTTCTTTCCAGTTTATTTTGTCACTTTCTTTCCAGAAAAACAGTAACTGCATAGGCTTTCATACCAATGAGGAAGATCCATTTGCAATTCTGGACAGAGAACTATTTATTTATTTTTTTGTCAGCTGTTGCATTCCACAAATGAACTGACAATATAGTTTGCAATCCGATATTAAAACTTGCTGGGCTTAACTCCTCTGTCTGTTAAGCTAAATACTGTTTGCTTGTCAAGTGTTAATTATGGGAGAATGGTCCAAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027908_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.009 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PD(15.3=96.4)
A:
PF0006717=p450=FE(12.2=100)
C2:
PF0006717=p450=PD(12.0=91.7)
Main Skipping Isoform:
ENSGALT00000044058fB6599
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTCCCTCTCTTGCCCACAA
R:
AGTTAGACCAAACCTTCCCTCCA
Band lengths:
256-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]