HsaEX1010872 @ hg38
Exon Skipping
Gene
ENSG00000155016 | CYP2U1
Description
cytochrome P450 family 2 subfamily U member 1 [Source:HGNC Symbol;Acc:HGNC:20582]
Coordinates
chr4:107910394-107978894:+
Coord C1 exon
chr4:107910394-107910549
Coord A exon
chr4:107931971-107932133
Coord C2 exon
chr4:107978720-107978894
Length
163 bp
Sequences
Splice sites
3' ss Seq
CGCAGGTGCTCCTGGCTCACCTA
3' ss Score
-7.2
5' ss Seq
AGGGTGAGC
5' ss Score
7.75
Exon sequences
Seq C1 exon
GTGGTTCCCCATCTTTTATTTTTTTGAGAAAAATGTACAAGGCTCAATTCCTTGCTGCTTCTCCTGGCCGCTGTCTTGGCCTCCTGGCTGCTTCAAATCATCATGCAAAAAGTATTCACGGGTTCAGAAGATTGGTGAAGACAATGAGAAATCGAC
Seq A exon
CTAGCCCGCGTGTACGGCAGCATCTTCAGCTTCTTTATCGGCCACTACCTGGTGGTGGTCCTCAGCGACTTCCACAGCGTGCGCGAGGCGCTGGTGCAGCAGGCCGAGGTCTTCAGCGACCGCCCGCGGGTGCCGCTCATCTCCATCGTGACCAAGGAGAAGG
Seq C2 exon
TCTGTTCTCTGTGCCAGCCCTTTCCTTTGCCAAAGCACTTGCTGTCTCTGAGTTGGTTTGGTGACCAGGGTCATATTTCCCAATACTTCACTCTTTCCACACAGAGAAATGAAGCACAACTCCAATAATAGGGTGAGGGTGCAAGTCAGGGACCACAGAAGTCACTACTGGGCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000155016_MULTIEX1-1/7=C1-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.098 C2=NA
Domain overlap (PFAM):
C1:
NA
A:
PF0006717=p450=PU(14.3=38.4)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCCTTGCTGCTTCTCCTGG
R:
TGACTTGCACCCTCACCCTAT
Band lengths:
258-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains