RnoEX0025991 @ rn6
Exon Skipping
Gene
ENSRNOG00000055078 | Cyp4b1
Description
cytochrome P450, family 4, subfamily b, polypeptide 1 [Source:RGD Symbol;Acc:2480]
Coordinates
chr5:134513646-134515048:-
Coord C1 exon
chr5:134514897-134515048
Coord A exon
chr5:134514658-134514764
Coord C2 exon
chr5:134513646-134513836
Length
107 bp
Sequences
Splice sites
3' ss Seq
CACTTATGCTCTTGGTCCAGATG
3' ss Score
6.24
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
Exon sequences
Seq C1 exon
AGACAACAGCTACTACCTGGCGGTCAGTGACCTCACACTGCTGATGCAGCAGCGCATCGACTCCTTCCAGTACCATAATGACTTCATTTACTGGCTCACTCCACATGGCCGCCGCTTCCTGCGGGCCTGCAAGATAGCCCATGACCATACAG
Seq A exon
ATGAGGTCATCAGGCAGCGGAAGGCAGCACTGCAGGATGAGAAAGAGCGGAAAAAGATTCAGCAGCGGAGGCACCTGGACTTCCTGGACATTCTCCTGGGTGTCCGG
Seq C2 exon
GATGAAAGTGGGATCAAGCTGTCAGATGCAGAGCTCCGGGCTGAAGTGGACACATTCATGTTTGAAGGCCATGACACCACCACTAGTGGTATCTCTTGGTTTCTCTACTGCATGGCCCTTTACCCTGAGCACCAGCAGCTATGTAGGGAGGAGGTCCGTGGGATCCTAGGAGACCAAGACTCCTTCCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055078-'9-9,'9-8,10-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.111 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.2=100)
A:
PF0006717=p450=FE(7.7=100)
C2:
PF0006717=p450=FE(13.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCATCGACTCCTTCCAGTAC
R:
CCTCCCTACATAGCTGCTGGT
Band lengths:
251-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]