GgaEX6044759 @ galGal3
Exon Skipping
Gene
ENSGALG00000010469 | F1NNP0_CHICK
Description
NA
Coordinates
chr8:22609501-22610882:+
Coord C1 exon
chr8:22609501-22609652
Coord A exon
chr8:22609833-22609939
Coord C2 exon
chr8:22610692-22610882
Length
107 bp
Sequences
Splice sites
3' ss Seq
TTGGTCGTTTTTCTACATAGATA
3' ss Score
8.2
5' ss Seq
AAGGTGAAG
5' ss Score
5.73
Exon sequences
Seq C1 exon
CAACTCAGACACTTACATCAAAGCCGTTTTCGACCTGGGCTACCTCATAAACAAGAGAATACAGAATTTCTCCTACCAAGATGCCTTCTATGACCTGACTCACAGCAGCCGGGAGTTTCAGGATGCCTGCAGGCGGGCCCATGCCCACACAG
Seq A exon
ATAAAGTAATACAAGAAAGAAAGATATTGCTCTCCAATGACAAGGAGCTAGACAAGATCCGGAAGAAGAGACACCTGGATTTTCTGGACATTCTTCTTTGTACCAAG
Seq C2 exon
GATGAGAATGGAGTTGGCCTGTCTGATGAGGACCTGCGTGCTGAGGTGGACACATTCATGTTTGAGGGGCACGACACCACAGCCAGCGGGATCTCATGGCTCCTGTACTGCATGGCATTGCACCCCAAGCACCAGGCACTGTGCAGGGAGGAGATCCAGGGGATCATGGGGAACCGGGATACCATTGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010469-'5-7,'5-5,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.3=100)
A:
PF0006717=p450=FE(7.7=100)
C2:
PF0006717=p450=FE(13.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCGACCTGGGCTACCTCAT
R:
AATGCCATGCAGTACAGGAGC
Band lengths:
244-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]