MmuEX7002479 @ mm10
Exon Skipping
Gene
ENSMUSG00000084346 | Cyp4a30b
Description
cytochrome P450, family 4, subfamily a, polypeptide 30b [Source:MGI Symbol;Acc:MGI:3717145]
Coordinates
chr4:115458213-115459160:+
Coord C1 exon
chr4:115458213-115458367
Coord A exon
chr4:115458778-115458884
Coord C2 exon
chr4:115458970-115459160
Length
107 bp
Sequences
Splice sites
3' ss Seq
TGCCTTTTGTCCTTGAACAGAAA
3' ss Score
8.68
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
AAATTCCAAATCCTACATTAAGGCTGTTGAAGATCTGACACACCTGATTTACTTGAGAGTGCGGAATGGCTTTCATCAGAATAATACCATCTACAGTCTGTCCTCCAATGGCCGCTCATTCTATCATGCCTGTCAGATTGCTCATAAACACACAG
Seq A exon
AAAGAGTGATCCGTATGAGGAAGGCTCAGCTGCAGAATGAGGCAGAGCTAGAGAAGTTCAGGAAGAAGAAGCGCTTGGATTTCTTGGACATCCTCTTGTTTGCTCAA
Seq C2 exon
ACAGAGGATGGGAAGAGCTTGTCTGATGAGGACGTGCGTGCAGAGATGGACACATTCATGTTTGAGGGTCATAACACCACAGCCAGTGGAATCTCCTGGATTTTCTATGCTCTGGCCACCCACCCTGAACACCAACAGAGATGCAGAGAGGAGGTGAAGAGTATACTGGGTAATGGAACCTCTGTCACCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000084346-'1-13,'1-6,6-13=AN
Average complexity
A_C3
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.109
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.5=100)
A:
PF0006717=p450=FE(7.7=100)
C2:
PF0006717=p450=FE(13.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGAGAGTGCGGAATGGCTT
R:
CTCTGTTGGTGTTCAGGGTGG
Band lengths:
244-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types