GgaEX6044759 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NNP0]
Coordinates
chr8:20787490-20788871:+
Coord C1 exon
chr8:20787490-20787641
Coord A exon
chr8:20787822-20787928
Coord C2 exon
chr8:20788681-20788871
Length
107 bp
Sequences
Splice sites
3' ss Seq
TTGGTCGTTTTTCTACATAGATA
3' ss Score
8.2
5' ss Seq
AAGGTGAAG
5' ss Score
5.73
Exon sequences
Seq C1 exon
CAACTCAGACACTTACATCAAAGCCGTTTTCGACCTGGGCTACCTCATAAACAAGAGAATACAGAATTTCTCCTACCAAGATGCCTTCTATGACCTGACTCACAGCAGCCGGGAGTTTCAGGATGCCTGCAGGCGGGCCCATGCCCACACAG
Seq A exon
ATAAAGTAATACAAGAAAGAAAGATATTGCTCTCCAATGACAAGGAGCTAGACAAGATCCGGAAGAAGAGACACCTGGATTTTCTGGACATTCTTCTTTGTACCAAG
Seq C2 exon
GATGAGAATGGAGTTGGCCTGTCTGATGAGGACCTGCGTGCTGAGGTGGACACATTCATGTTTGAGGGGCACGACACCACAGCCAGCGGGATCTCATGGCTCCTGTACTGCATGGCATTGCACCCCAAGCACCAGGCACTGTGCAGGGAGGAGATCCAGGGGATCATGGGGAACCGGGATACCATTGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010469-'5-9,'5-6,6-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.3=100)
A:
PF0006717=p450=FE(7.7=100)
C2:
PF0006717=p450=FE(13.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCGACCTGGGCTACCTCAT
R:
AATGCCATGCAGTACAGGAGC
Band lengths:
244-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]