HsaEX6030785 @ hg38
Exon Skipping
Gene
ENSG00000186377 | CYP4X1
Description
cytochrome P450 family 4 subfamily X member 1 [Source:HGNC Symbol;Acc:HGNC:20244]
Coordinates
chr1:47036017-47039532:+
Coord C1 exon
chr1:47036017-47036171
Coord A exon
chr1:47038660-47038766
Coord C2 exon
chr1:47039342-47039532
Length
107 bp
Sequences
Splice sites
3' ss Seq
GAAACTATTTTTCTACCCAGATA
3' ss Score
5.71
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
CACCCATGATCCTTATGCAAAAGCCATATTTGAACTCAGCAAAATCATATTTCACCGCTTGTACAGTTTGTTGTATCACAGTGACATAATTTTCAAACTCAGCCCTCAGGGCTACCGCTTCCAGAAGTTAAGCCGAGTGTTGAATCAGTACACAG
Seq A exon
ATACAATAATCCAGGAAAGAAAGAAATCCCTCCAGGCTGGGGTAAAGCAGGATAACACTCCGAAGAGGAAGTACCAGGATTTTCTGGATATTGTCCTTTCTGCCAAG
Seq C2 exon
GATGAAAGTGGTAGCAGCTTCTCAGATATTGATGTACACTCTGAAGTGAGCACATTCCTGTTGGCAGGACATGACACCTTGGCAGCAAGCATCTCCTGGATCCTTTACTGCCTGGCTCTGAACCCTGAGCATCAAGAGAGATGCCGGGAGGAGGTCAGGGGCATCCTGGGGGATGGGTCTTCTATCACTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186377-'7-8,'7-7,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.111 C2=0.016
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.4=100)
A:
PF0006717=p450=FE(7.7=100)
C2:
PF0006717=p450=FE(13.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCGCTTGTACAGTTTGTTGT
R:
CCTCCCGGCATCTCTCTTGAT
Band lengths:
254-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains