RnoEX0026032 @ rn6
Exon Skipping
Gene
ENSRNOG00000043513 | Cyp4x1
Description
cytochrome P450, family 4, subfamily x, polypeptide 1 [Source:RGD Symbol;Acc:628719]
Coordinates
chr5:133933617-133942241:-
Coord C1 exon
chr5:133942087-133942241
Coord A exon
chr5:133940927-133941027
Coord C2 exon
chr5:133933617-133933750
Length
101 bp
Sequences
Splice sites
3' ss Seq
AGACCTATTACTCTATGCAGAAA
3' ss Score
4.01
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
CACCTATGAGTCTTATGTGAAGGCAACATTTGAACTTGGTGAAATCATATCTTCTCGCTTGTACAATTTCTGGCATCATCATGACATAATTTTCAAACTCAGTCCTAAGGGCCACTGCTTCCAGGAGTTAGGCAAAGTGATACATCAATGCACAG
Seq A exon
AAAAGATTATCCAGGACAGAAAGAAAACCCTCAAGGATCAAGTAAATCAGGATGACACTCAAACATCTCAAAATTTTCTGGATATTGTTCTTTCTGCCCAG
Seq C2 exon
GGAACAGCTGGATGAGATACCTTACACTACAATGTGCATCAAGGAGACACTCCGCTTGATTCCTCCCATCCCATCCATCTCCAGGGAACTCAGCAAACCCCTTACCCTCCCAGATGGACACTCGCTGCCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043513_MULTIEX1-4/6=2-6
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.088 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.4=100)
A:
PF0006717=p450=FE(7.2=100)
C2:
PF0006717=p450=FE(9.9=100)
Main Skipping Isoform:
ENSRNOT00000011985fB3833
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCAACATTTGAACTTGGTGA
R:
AGGGTAAGGGGTTTGCTGAGT
Band lengths:
243-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]