RnoEX0026033 @ rn6
Exon Skipping
Gene
ENSRNOG00000043513 | Cyp4x1
Description
cytochrome P450, family 4, subfamily x, polypeptide 1 [Source:RGD Symbol;Acc:628719]
Coordinates
chr5:133933617-133941027:-
Coord C1 exon
chr5:133940927-133941027
Coord A exon
chr5:133940261-133940451
Coord C2 exon
chr5:133933617-133933750
Length
191 bp
Sequences
Splice sites
3' ss Seq
GTCTTTGCTGGGTGTTACAGGCT
3' ss Score
6.88
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
AAAAGATTATCCAGGACAGAAAGAAAACCCTCAAGGATCAAGTAAATCAGGATGACACTCAAACATCTCAAAATTTTCTGGATATTGTTCTTTCTGCCCAG
Seq A exon
GCTGGAGATGAAAAGGCCTTCTCAGATGCTGACCTTCGGTCTGAGGTGAACACCTTCATGTGGGCAGGACACGACGCCTCTGCAGCTAGCATCTCCTGGCTCCTTTACTGCCTGGCTCTGAACCCTGAGCATCAAGACAGATGCCGGACAGAGATCAGGAGCATTCTGGGAGATGGGTCTTCCATCACCTG
Seq C2 exon
GGAACAGCTGGATGAGATACCTTACACTACAATGTGCATCAAGGAGACACTCCGCTTGATTCCTCCCATCCCATCCATCTCCAGGGAACTCAGCAAACCCCTTACCCTCCCAGATGGACACTCGCTGCCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043513_MULTIEX1-5/6=4-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.088 A=0.016 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(7.2=100)
A:
PF0006717=p450=FE(13.8=100)
C2:
PF0006717=p450=FE(9.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTATCCAGGACAGAAAGAAAACCCT
R:
CAGGCAGCGAGTGTCCATC
Band lengths:
226-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]